Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi367g00023 ATGCTACTATGGCAGAACCTGAAGCACCTACCACCAACTCCCTCCACCGCCACTCCTCCGCCGGTGTCTAAGAGCTGGGCCGACGAAGCAGAAGAAGAAACCAACGCCTCGTCGAGCTCCGCAACAGAATCCTCGTCGCTCAGCGTAGAAGGATTAGCGATTGACGAGAACAGGAAGTCTTCCAAGTTATTGGACGAACCCGAGGACTCCAACATTCAAGCGGTTACCTCCGGCGACACTCCGTATACCTCGGCTGCCACCTTCGAAGAGTTGAATCTCTCACCGGAGCTAGTTAAGGGACTCTATGTGGAGATGAAGTTCCAGAAACCTAGTAAAATCCAAGCAATAAGCTTGCCCATGATCCTGAGCCCTCCGCATAAGGATTTGATTGCGCAGGCGCATAACGGTTCCGGAAAGACCACTTGTTTCGTGCTTGGGATGCTTAGTCGCGTGGATCCAAAGTTGCAGGCTCCTCAAGCTCTCTGCATTTGCCCCACCAGGGAGCTGGCTATTCAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAGGACATAGAAAAATTCAATTCTAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACTGTCAAGAATTTTGCTTCAAGGACAGTTAAGAAGGATCATAATAAACTATTTGTAAAGAAAGAAGAATTATCTTTAGATGCTGTGAAGCAATATAAAGTGCATTGTCCAGATGAACTCTCTAAGATTGAAGTAATAAAAGATTACATACTTGAAATGGGAGAGAATGTGGGGCAAAGTATTATATTTGTACGGACAAGAAATAGTGCAAGAATGTTGCATAAATCCCTTGTTGATTTGGGCTACGAGGTTTCTTCCATACAAGGTGCTCTTGACAATGAAATGAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGGGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCGGTGAAATACACTGCTGGGTATAACCCTGATCCTGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGAGCTGGGCGTTTCGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGACAAAAGGGATGAAAAGCTCTTGTCAAAGATTGTGAACCATTTTGGCACTCATGTATCCGAGGTGCGTGAAAATAGTGTTGAAGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTACTGCAATAA 1281 0.4473 MLLWQNLKHLPPTPSTATPPPVSKSWADEAEEETNASSSSATESSSLSVEGLAIDENRKSSKLLDEPEDSNIQAVTSGDTPYTSAATFEELNLSPELVKGLYVEMKFQKPSKIQAISLPMILSPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQADQMLAEDGFKDDSLRIMKDIEKFNSSCQVLLFSATFNETVKNFASRTVKKDHNKLFVKKEELSLDAVKQYKVHCPDELSKIEVIKDYILEMGENVGQSIIFVRTRNSARMLHKSLVDLGYEVSSIQGALDNEMRDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAGYNPDPEPDYEVYLHRVGRAGRFGRKGAVFNLICDKRDEKLLSKIVNHFGTHVSEVRENSVEDYKAALKEAGLLQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi367g00023 426 SMART helicmild6 282 375 IPR001650 -
Sebi367g00023 426 MobiDBLite consensus disorder prediction 1 79 - -
Sebi367g00023 426 Gene3D - 64 172 IPR027417 -
Sebi367g00023 426 Pfam Helicase conserved C-terminal domain 253 375 IPR001650 -
Sebi367g00023 426 Gene3D - 239 419 IPR027417 -
Sebi367g00023 426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 204 IPR014001 -
Sebi367g00023 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 172 - -
Sebi367g00023 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 416 IPR001650 -
Sebi367g00023 426 Pfam DEAD/DEAH box helicase 112 172 IPR011545 GO:0003676|GO:0005524
Sebi367g00023 426 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Sebi367g00023 426 SMART ultradead3 106 243 IPR014001 -
Sebi367g00023 426 CDD SF2_C_DEAD 240 384 - -
Sebi367g00023 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 391 IPR027417 -
Sebi367g00023 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 179 IPR027417 -
Sebi367g00023 426 MobiDBLite consensus disorder prediction 32 51 - -
Sebi367g00023 426 Gene3D - 173 238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi367g00023 Sebi-Chr367 286060 290705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi367g00023 172 410 Eukaryotic Initiation Factors Gene Family AT1G72730 37.860 2.02e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi367g00023 K18655 - gmx:100778091 407.912