Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi366g00035 ATGGAGGAGGATATGGAAATTGATCATATTGTGGATGTTCCTGATACCCCAGATAGATTAAATGCTGGGCATGATAATCGGAAATATGTAGGTAATCCTGAGAAGAGGGAGAGGACTTTTTCTGCTGCTAATGAAATGAGTAACTGCAGCAACTACATAACAGTGTCCCCATCAGACAAATCCCATCCTTCTAAAAATGCTCCCATCTTTAGGAGAGCTCAAACTGAGAAATTTTCTGGTCTGGGCACAAGCACAACACACTCTAATGGAACTGAAAGGGTGGACAAAGGGAAAACTATAAGCTCTAAATTTCCTTCTAAATCATCTCACCATGGACCTATTTCTATTTTAGATTTGACGGGAGAGAATAGACAGTTCCAACAACGGAAACCAACTTTCTCACATCGTGGATCAAGAGATAATACAACTGAAAACAAGAAAGTACCAAAATTAAGTATTGGGAACTCTTCATTACCTTTCATCACTGATTCTTCTAACACATCTAGTAATGCCTTCACTGGAAAGTGTAAACTAGATGACAAAACACTTCCAGGTCCTAATATAGCTATGGACCGTGGCAAGAGCATTTCTCTGTCTAATGATTCTCATTCTCAATCAAAAACTGAAAAGCAAGTGTCTTTGCCTCCTTGTCTTTCCACCACTCCAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCACAGAATATTGCAACAAGAGCAAAACAATCAGTTGAACAGAGCAGCCTTCAAACCAATCATGTTGAACAGAACCATTCTGGGCATTCAGTTTCTAGCAATACAATGTCACCGATTAGTATTGATGATATAGTTTCTGAAAAGAGAGATAGTGGTAGAAGGAAAGGAAAGGAAGTACTTATTCATCCTTCATCACATGGACTGAATGCTGGAACTATTCAAACCACTAGCAGCCTAATGATCAATCATGAAGATGCCAATGTTACTCGTAATACTATAAGAAACCCTGAGGGACAAGGTGGTTGGAGAACTACACATAATGAGAAGAATGCTGATCAACACTTGTATGATGTAAATGAGCATCATTCAAGGAGAAATTATGATTCTGGAAGATTTATTAACAGACAGAATATGAACAGAATGGGCAGAAGAGACACTGGGAGCAGTCAAAATGGTGAGGATGCTCATGCTTCTCTATTAGATCATACACCTCGACCAACTTTGCTGATCATTCCGGAGGAAGACCAGTCAACTAGACCTCGTCCTCCTGCTGACACACTGACTAAAAGGCAAAGGAAACGTGGTTCAACTTCGGGAAATCCTAATGAGGCATCTCATAATACTGAAATTATGTTCCTCAATTCATCTGGAGAGTCATCAGGCTCATCGCGAAACCGTGTCTCGGATCCAGAAGTGATTGAGTTGTTATCCACACCGAGGTACATCAACAGAATTTCTGAAGATTTAGATGACAATGACAATAATAGCTTGGATGCTCGGGCAAGACAAGTAGAAGCAGATGAGATATTGGCACGTGAGCTCCAAGAACAACTTTATCATGATGATTTTTCTGAAGGCAGAGGGTTTGATGAACATTTAGCCTGGGAGCTGCAGCATGCAGAGGATCTTGGGCATACATCTAATGATAGTCACCATATATCTCATCCTACATGGTTTCCAAGGGCAAATAGACAGCCCCGTTCACGGACTCATCAAAATCCATCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTTTCTCTAATAGAATGTCACAATTAAGGAGTCGCATCGGCATTGCAAGTCGGACTCGGTCATCAACTCCTATCATGGCATCTAGAGGAAGACGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGACCTACTGGAAGCATTAGAAGATGCAGTAGGGGATCTTAATGATATGGGAATGACTGATGACATCTTTCATGCTCACCGTGATTTCAATGAAGATGATTATGAAATGTTATTAGCCCTTGATGAGCAAAATCACCAGCATACTGGTGCAACTGCCAATCAGATCAATAGTTTGCCACAGTCCACCATCCAGTTTTGGGGCAGGGAATCAGGTGATAGGGAAAATAGGGGTGGTGGGAAACAATGCACTTGGAATTTGGGAATAACTTTAGATTCAACACTAATCTATGTTCCTGTTCATTTGCTACAGACTGACAACTTCACAGAGGCATGTGCCATATGTCTTGAGACCCCAGTCAAGGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGCATTGATCCTTGGCTCCGTAGGAAAACTTCATGCCCCGTGTGCAAGTCTTCTATCACCTAA 2349 0.4155 MEEDMEIDHIVDVPDTPDRLNAGHDNRKYVGNPEKRERTFSAANEMSNCSNYITVSPSDKSHPSKNAPIFRRAQTEKFSGLGTSTTHSNGTERVDKGKTISSKFPSKSSHHGPISILDLTGENRQFQQRKPTFSHRGSRDNTTENKKVPKLSIGNSSLPFITDSSNTSSNAFTGKCKLDDKTLPGPNIAMDRGKSISLSNDSHSQSKTEKQVSLPPCLSTTPRGRGHKRLVRNGCISPQNIATRAKQSVEQSSLQTNHVEQNHSGHSVSSNTMSPISIDDIVSEKRDSGRRKGKEVLIHPSSHGLNAGTIQTTSSLMINHEDANVTRNTIRNPEGQGGWRTTHNEKNADQHLYDVNEHHSRRNYDSGRFINRQNMNRMGRRDTGSSQNGEDAHASLLDHTPRPTLLIIPEEDQSTRPRPPADTLTKRQRKRGSTSGNPNEASHNTEIMFLNSSGESSGSSRNRVSDPEVIELLSTPRYINRISEDLDDNDNNSLDARARQVEADEILARELQEQLYHDDFSEGRGFDEHLAWELQHAEDLGHTSNDSHHISHPTWFPRANRQPRSRTHQNPSNRRRTVPQVPFSNRMSQLRSRIGIASRTRSSTPIMASRGRRPRFPLDMDLDMRLDLLEALEDAVGDLNDMGMTDDIFHAHRDFNEDDYEMLLALDEQNHQHTGATANQINSLPQSTIQFWGRESGDRENRGGGKQCTWNLGITLDSTLIYVPVHLLQTDNFTEACAICLETPVKGEIIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi366g00035 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 782 IPR013083 -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 327 346 - -
Sebi366g00035 782 Pfam Ring finger domain 736 778 IPR001841 -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 247 308 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 327 343 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 367 393 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 358 445 - -
Sebi366g00035 782 PANTHER SI:CH211-59O9.10 238 782 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 73 151 - -
Sebi366g00035 782 CDD RING-H2_PA-TM-RING 737 778 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 430 445 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 280 298 - -
Sebi366g00035 782 ProSiteProfiles Zinc finger RING-type profile. 737 778 IPR001841 -
Sebi366g00035 782 SUPERFAMILY RING/U-box 722 781 - -
Sebi366g00035 782 SMART ring_2 737 777 IPR001841 -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 247 278 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 193 218 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 558 580 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 543 580 - -
Sebi366g00035 782 MobiDBLite consensus disorder prediction 178 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi366g00035 Sebi-Chr366 1086111 1092241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi366g00035 219 782 C3H Transcription Factor Family AT1G04790 33.677 2.63e-65 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi366g00035 - - aprc:113872307 1040.41