Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi364g00002 ATGCATTATGCAATGATAGAAAATAATCTTATGGAAGAAACAGAGGATTCAAATGCTTTAGCTCCAACTGAGGTAGATTCTAAAAAAGCATGTGAACATAATACAACATTGGATGAAGAAATTGGAATCTATTGCCTTAAATGTGGCGATGTGATCACAGAGATAAGAGATGTCATGGCACCCTTTGTACAACCACGCCGAGGAAGACGTTACCAAGGGGAGGAGCAATGCAATGGGGATTCCAAGCCCGAGCTCAAGCCAAAGGATAAGGACAATGAAGATGATGATTCTCATTCTATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAAATTCCTATTCCAGTGTATCTGATTCGTGGTCTTAAAGACATGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCATTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAACGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAGATAACGGAATTGATAAAAATCCAAAGAAAGCAAAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGGGAGGATACAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCATATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGATTTTGCGGAGGAACCCTTCCCAGTGTCAAGCAGAGAAGATTGA 2040 0.3892 MHYAMIENNLMEETEDSNALAPTEVDSKKACEHNTTLDEEIGIYCLKCGDVITEIRDVMAPFVQPRRGRRYQGEEQCNGDSKPELKPKDKDNEDDDSHSMTMNASHYEPLSIENDNVLSLIPELSKKMHDHQKKGFQFIWQNIAGSTQPTLMEAKSEKIGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRGLKDMRDFDETPLTIPGVPNPTGDVKHVLDCIEKIKKWHLHPSVLVMGYTSFLSLTRENSTYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQDNGIDKNPKKAKLLLETRARKFFLDDIANKIDSSDDEGRIQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLHMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKYKSDFKVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFAEEPFPVSSRED 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi364g00002 679 Gene3D - 431 675 IPR027417 -
Sebi364g00002 679 Pfam Helicase conserved C-terminal domain 511 627 IPR001650 -
Sebi364g00002 679 MobiDBLite consensus disorder prediction 68 101 - -
Sebi364g00002 679 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 670 IPR044567 GO:0080188
Sebi364g00002 679 SMART ultradead3 124 364 IPR014001 -
Sebi364g00002 679 Pfam SNF2-related domain 137 456 IPR000330 GO:0005524|GO:0140658
Sebi364g00002 679 SMART helicmild6 539 628 IPR001650 -
Sebi364g00002 679 MobiDBLite consensus disorder prediction 66 102 - -
Sebi364g00002 679 Gene3D - 95 390 IPR038718 -
Sebi364g00002 679 MobiDBLite consensus disorder prediction 1 21 - -
Sebi364g00002 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 359 IPR027417 -
Sebi364g00002 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 352 IPR014001 -
Sebi364g00002 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 666 IPR027417 -
Sebi364g00002 679 CDD SF2_C_SNF 503 639 - -
Sebi364g00002 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 679 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi364g00002 Sebi-Chr364 37994 40308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi364g00002 554 646 RAD5 or RAD16-like Gene Family AT5G05130 39.362 2.61e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi364g00002 SNF2_N 1.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi364g00002 K10875 - qsa:O6P43_013801 880.552