Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi363g00023 ATGGCTCCGCCGCCGCCGGTGGAAAACAACGGAGACTCCACCACGGCCGTCGCCACGGCTATAGAGTCTCAGAGATCTATTCCGACGCCGTTTCTCACTAAAACCTACCAGCTCGTCGAGGACCAATCCATCGATGACGTGATTTCTTGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCGAGAGACTTGCTCCCTAAATATTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTACCTGATCGATGGGAATTCTCGAACGAGTGTTTCCGCAGAGGCGAGAAGAGGCTTCTGTGCGAGATTCAACGGCGGAAGATCTCGCCTCCGTCGCCGTCGACGACGGCGGCAGTAACGGCCGCGGCAACTGCCACGGTTGCGGTTATATCGTCGAGCTCGTCGCCGTCGAGAGCTCCGGCGGAGCTTCTCGACGAAAACGAGAGGCTGAGGAAAGAGAACGTTCAGTTGAACAAGGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATATACACTCTCATGTCGAATTACGCGAACGCTAACAACAATAACAACCAAACGGACGGCGGCAGCAGCGGCGGCGCGCAAGGAAGTAGAGAATCCGGCATGACGGCGGTGAAGCAGCTTGATTTGATGCCGGTGAAACGGAGCTCCGTCGAGGAGGCGGCGACGGAGACAGCGGTGGTGGAGATGAATCCAAAGCTGTTTGGTGTTGCGATAGGAGCAAAGCGAGCGAGAGAGGGCGGTGGAGGAGGTGGAGAAGGAGATGGAGGTGGTGGAGGGGAGGAAGATACGATGTTGAGCCTGCATCAACCAGGTCCTACGGACGTGAAATCAGAGCCGTTGGATTGTCAGAACCATCGAGATAATCAACAAACACCTTGGCTAAACCTGTGCCGTAGAACCAATCAGAGGGGAATCCGAGACCGAGCACGCGGAGGCACACGTGACAATCCGTCACGTGCGTCGTTTAACCGTATGGGACCGATTCCCAGAAGTTTCTCAGGGGGACGCACATAA 1065 0.5484 MAPPPPVENNGDSTTAVATAIESQRSIPTPFLTKTYQLVEDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISPPSPSTTAAVTAAATATVAVISSSSSPSRAPAELLDENERLRKENVQLNKELAEMRSLCNNIYTLMSNYANANNNNNQTDGGSSGGAQGSRESGMTAVKQLDLMPVKRSSVEEAATETAVVEMNPKLFGVAIGAKRAREGGGGGGEGDGGGGGEEDTMLSLHQPGPTDVKSEPLDCQNHRDNQQTPWLNLCRRTNQRGIRDRARGGTRDNPSRASFNRMGPIPRSFSGGRT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi363g00023 354 MobiDBLite consensus disorder prediction 301 315 - -
Sebi363g00023 354 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi363g00023 354 FunFam Heat stress transcription factor B-4 23 121 - -
Sebi363g00023 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 230 IPR027725 -
Sebi363g00023 354 Coils Coil 154 181 - -
Sebi363g00023 354 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi363g00023 354 Gene3D - 23 121 IPR036388 -
Sebi363g00023 354 MobiDBLite consensus disorder prediction 260 354 - -
Sebi363g00023 354 MobiDBLite consensus disorder prediction 197 217 - -
Sebi363g00023 354 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Sebi363g00023 354 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi363g00023 354 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi363g00023 354 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi363g00023 354 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi363g00023 Sebi-Chr363 719723 721075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi363g00023 23 320 HSF AT5G62020 48.297 1.47e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi363g00023 HSF_DNA-bind 7.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi363g00023 K09419 - gmx:100812267 429.483