Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi363g00009 ATGGGTATCAAACGCTTCCACATGGCACTCTTATTCCTCTTAGCAACGTTTTCTTCGTTGTTCCATGCCACGTATGCTCAATCAGGTGCACAACCACCGGTACCTTCACGCGCTTCCAACGAAGGTGCAAACACGACGCTTCCGATGTTGCTCGTGCTTTTCGTTTTCGCGTCCTTCATCACGTGCTTCTGTTCCTTCTACGTTCGCTACTGTTCCGAACGGTACGTGGTTACGGCAACCACCGTTACAACTAACGGCGTCGACCCGGAAGTTCTTGCCACGTGTCCTATCGTGGTTTACTCCGCCGTTAAAAAGGGTCACCACCACGTGGCAATGCAATGCGCTGTGTGCTTGGGTGAGTTCGGGGATCTCGACGCGCTTCGGTTGTTGCCGAAGTGCAGTCACGTGTTCCACACGCGTTGTATTGACACGTGGCTGTCTTCGCACGTGACCTGCCCCATTTGTCGCGGCGAAATAGTCGCGGAAATTGGGTGTGAAAACGGTGCGTGCCAAGTGTTTGGTGAAAGTTCTGTGAGAAGAATCGATGTTGGGAATGGAAGTGGGGTTTGTGGGAATGTTGATGGGTGCGTTGGGAAGGGTAATGGGTCTTCAAAGGTGGGTGCTTTTGGGGTTTTGGTGAGGTCCCACTCGACGGGTCATTCGTTGGTTGAACCGGAGAAGAGTGAGGATGTGGAGGTGAAAATGCAGATTGTGGAGGATAAAGGTGGGAATTTGATGATTGGGATGAAGCGTTCGGCGAGCTACGACGTCGTTTTGAGGATTGAAGAAGTGGGGTCGGGTAAGGATGAAGAAAGGGGTGAAGGTAGCAGCAGAAAGGGTCGGTTTGGATGGGGTTGTTCGAGTGTGACATCACCGAATGCGTCCACCACGTGTCCTGGGATTTCAAGGTTTTGGGCTTCTTCTGTTGTGAGAGAAGACATAGAGTTTAAAGAGAAAACGATTTTTCAAATCGTGTGA 978 0.5112 MGIKRFHMALLFLLATFSSLFHATYAQSGAQPPVPSRASNEGANTTLPMLLVLFVFASFITCFCSFYVRYCSERYVVTATTVTTNGVDPEVLATCPIVVYSAVKKGHHHVAMQCAVCLGEFGDLDALRLLPKCSHVFHTRCIDTWLSSHVTCPICRGEIVAEIGCENGACQVFGESSVRRIDVGNGSGVCGNVDGCVGKGNGSSKVGAFGVLVRSHSTGHSLVEPEKSEDVEVKMQIVEDKGGNLMIGMKRSASYDVVLRIEEVGSGKDEERGEGSSRKGRFGWGCSSVTSPNASTTCPGISRFWASSVVREDIEFKEKTIFQIV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi363g00009 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 161 IPR013083 -
Sebi363g00009 325 FunFam E3 ubiquitin-protein ligase ATL6 76 162 - -
Sebi363g00009 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 167 - -
Sebi363g00009 325 Pfam Ring finger domain 113 156 IPR001841 -
Sebi363g00009 325 CDD RING-H2_EL5-like 113 156 - -
Sebi363g00009 325 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Sebi363g00009 325 SUPERFAMILY RING/U-box 106 162 - -
Sebi363g00009 325 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi363g00009 Sebi-Chr363 252528 253505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi363g00009 8 282 Rapid Response to Elicitors AT3G05200 30.519 6.37e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi363g00009 K10664 - gmx:102665105 223.787