Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi363g00007 ATGCAGAAAAGTGCTGAGTCACGCATCATCATCACCAGAACCAACCCAATTGGTGCTACTAACACAAATTGCCCATGTTCTTGTTCACAAGGCATCAACAAAGAACTCCTCAGCACCTTCCCAATTATCTTTTACTCCACAATCAAGGACCTTAAAACAGGTAAAGGACCTTTAGAATGTGCAGTGTGTTTGACAGATTTCAAAGACCAAGACACCCTTAGGTTACTACCTAAATGCAACCATGTGTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCTCATGTTACATGCCCAGTTTGTCGTGCAAATCTGAACCAAGATTCATGCCAAGTTGCCATAACCATCCCAACCCATTTGACCAATGATGAGGAAGGTTCTGAAACCAGAGGTCAAATTCAACGGGTCATTCGATGGTTGAAACCAGTGAAGTGTGTGGAGAGGTACACGCCTGAGGTTACCAGAGGATTGACAATGAAGGGAAGCAGCATAGAGAAGGGGATCAATGAAGAAGAAAAAGTGGAACGGTGGGTGCTGTGTGCACCACCATTTGTTACGCGTCATGGTTGA 570 0.4439 MQKSAESRIIITRTNPIGATNTNCPCSCSQGINKELLSTFPIIFYSTIKDLKTGKGPLECAVCLTDFKDQDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAITIPTHLTNDEEGSETRGQIQRVIRWLKPVKCVERYTPEVTRGLTMKGSSIEKGINEEEKVERWVLCAPPFVTRHG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi363g00007 189 Pfam Ring finger domain 59 102 IPR001841 -
Sebi363g00007 189 SMART ring_2 60 101 IPR001841 -
Sebi363g00007 189 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Sebi363g00007 189 SUPERFAMILY RING/U-box 59 108 - -
Sebi363g00007 189 FunFam E3 ubiquitin-protein ligase ATL6 21 108 - -
Sebi363g00007 189 CDD RING-H2_EL5-like 59 102 - -
Sebi363g00007 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 112 IPR013083 -
Sebi363g00007 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi363g00007 Sebi-Chr363 180287 181083 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi363g00007 18 143 Rapid Response to Elicitors AT3G05200 45.238 2.48e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi363g00007 K10664 - gmx:100782532 185.267