Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi362g00078 ATGGCAACCCTTTCAGAGACCTACGCCTGTGTGCCCTCCACTGAGCGTGGCCGCGGCATCCTCATCTCCGGCGATCCCAAATCCAACAACATTCTCTACTGCACCGCCCGATCCGTCCTCATCCGCAACCTCGATAACCCCCTCCAGGTCTCCGTCTACGGCGAGCATGCCTACCCCGTCACCGTCGCCCGCTACTCCCCCAACGGCGAGTGGATCGCCTCTGCTGACGTCTCCGGCACCATCCGCATATGGGGGACCCACAACGACTACGTCCTCAAGAACGAGTTCCGGGTCTTATCGGGTCGAATCGACGATATCCAGTGGTCCGCCGATGGGTTGAGGATCGTTGCCTGTGGGGATGGCAAGGGCAAGTCATTCGTGCGCGCCTTTATGTGGGATTCAGGTTCCACTGTTGGTGATTTTGATGGCCATTCGCGGCGAGTTTTAAGTTGTGCATTCAAACCAACAAGGCCATTCCGCATTGTCACATGCGGAGAAGATTTTTTAGCTAATTTTTATGATGGTCCACCCTTCAAGTTCAACATGTCCATCAGGGACCATTCAAATTTCGTCAACTGTGTGAGATTTTCTCCAGATGGGAGCAAATTTATTACAGTTAGCTCAGATAGGAAGGGTATTATATACGATGGAAAGACAGGTAATAAACTTGGAGAATTGTCGGCAGAGGATGGTCACAAGGGCAGCATATATGCTGTTAGTTGGAGTCCTGACAGTAAACAGGTTCTTACTGTGTCTGCTGACAAAACTGCAAAAGTATGGGATATTCTTGAGAATGGTAGTGGGACAGTAAATAAGACTTTGGCATTTACTGAATCTGGTGGGGTGGAGGACATGCTCGTTGGTTGTCTTTGGCAGAATGATCATCTGCTTACTGTCTCTCTTGGTGGCACAATTAATTTATATTCTGCTAAGGATTTAGATAAAAGCCCATTGTCATTATCTGGTCACATGAAGAATGTCACCGTTTTGACTCTGCTCAACAGAAGTGAAAAGATGCTTTTGTCCAGCAGCTATGATGGAGTGATCATTAGATGGATTCCAGGCACTGGGTACAGTGGTAAGTTTGAGAGTAAACAATTTGGATTAATCAAATTGTTAGCGACTGGCGAAGAAGAAGTTATCACTTCTGGATTTGACAACAAGGTATACAGAGTTCCTCTTCATGGGGATAATTTTAGTCCTGCTGAGCATGTTGATGTTGGAAGTCAGCCTATGGATTTGAGCCTTGCACTTAATTCCCCTGAACTTGCTCTCATTGCAATTGAATCTGGGGTTGTCTTGCTTAATGGTTCAAAAATTGTCTCAACTATAAACCTGGGCTTTACTGTGACCGCATCCGCTATTTCACCTGATGGTAGTGAAGCAATTGTAGGTGGGAAAGATGGTAAATTACACATATATTCTGTCTCAGGAGATACACTTACAGAACAGAGTGTCCTTGAGAAACACCGAGGTGCCATCAGTGTAATCAGATATTCTCCAGACGTTTCCATGTTTGCATCAGCTGATCTGAATCGTGAAGCTACTGTGTGGGACCGTGTTTCCAGAGAGGTGAAGCTCAACAACATGTTGTTTCACACTGCACGTATTAACTGCCTAGCTTGGTCACCTGATAGCAGACTGGTAGCTACCGGTTCACTTGATACATGTGTCATTATATATGAAATTGGAAAGCCAGCATCAAGCCGCAGAACCATAAAGAATAAATCAGCATCAGAACCTCCCAATGCATGA 1755 0.4615 MATLSETYACVPSTERGRGILISGDPKSNNILYCTARSVLIRNLDNPLQVSVYGEHAYPVTVARYSPNGEWIASADVSGTIRIWGTHNDYVLKNEFRVLSGRIDDIQWSADGLRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDFLANFYDGPPFKFNMSIRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSAEDGHKGSIYAVSWSPDSKQVLTVSADKTAKVWDILENGSGTVNKTLAFTESGGVEDMLVGCLWQNDHLLTVSLGGTINLYSAKDLDKSPLSLSGHMKNVTVLTLLNRSEKMLLSSSYDGVIIRWIPGTGYSGKFESKQFGLIKLLATGEEEVITSGFDNKVYRVPLHGDNFSPAEHVDVGSQPMDLSLALNSPELALIAIESGVVLLNGSKIVSTINLGFTVTASAISPDGSEAIVGGKDGKLHIYSVSGDTLTEQSVLEKHRGAISVIRYSPDVSMFASADLNREATVWDRVSREVKLNNMLFHTARINCLAWSPDSRLVATGSLDTCVIIYEIGKPASSRRTIKNKSASEPPNA 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Sebi362g00078 584 SUPERFAMILY WD40 repeat-like 37 562 IPR036322 GO:0005515
Sebi362g00078 584 FunFam Actin-interacting protein 1 338 580 - -
Sebi362g00078 584 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Sebi362g00078 584 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Sebi362g00078 584 Pfam WD domain, G-beta repeat 222 261 IPR001680 GO:0005515
Sebi362g00078 584 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Sebi362g00078 584 FunFam Actin-interacting protein 1 11 337 - -
Sebi362g00078 584 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Sebi362g00078 584 Gene3D - 11 339 IPR015943 GO:0005515
Sebi362g00078 584 Gene3D - 7 575 IPR015943 GO:0005515
Sebi362g00078 584 SMART WD40_4 89 133 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 46 85 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 313 353 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 437 475 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 267 309 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 480 519 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 524 562 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 177 216 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 134 174 IPR001680 GO:0005515
Sebi362g00078 584 SMART WD40_4 219 261 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 519 IPR001680 GO:0005515
Sebi362g00078 584 CDD WD40 56 352 - -
Sebi362g00078 584 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 576 - -
Sebi362g00078 584 SUPERFAMILY NHL repeat 176 431 - -
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Sebi362g00078 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi362g00078 Sebi-Chr362 1041142 1047019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi362g00078 184 508 Eukaryotic Initiation Factors Gene Family AT2G46290 24.709 2.22e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi362g00078 K24736 - gmx:100798693 1056.97