Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi362g00042 ATGACTAGTGCAACTGGAAAATCGACGAGCCTTAACGTCAGTACCACTGAGCAGATGGGAACGGAGCAATGTGAGTTGTCTGAAAAGACACATCAGATAGGTTCTGAATGTTTAGACAGCGAACAAAGGGTGCTTGGTACTGTGCTAACTAGTTCTGCTATCGATGAAAAATCAACTCAAGTTTCTGCCAATAATACCGAGAATTCTGTTATCCAACTACCTGCACCACCCCAACATTGCTCAGAAGAAAGTTGTCAGGTTGTAGAAGGTTCATGCCTTCAACAAAGTACCTTTGAACAAGTCCCTGTTCATTTATCTAATGATAAATCAGAAAACAAATGTCAGACGTTGTCTCAAAATGTTCAAAATGCACCTGTAGAAATAAGTGATGCAGGAATTGGCTTTGTTGCTGTGGACCAAATGCAATCCGTTCCTTCTCAGGTGACCACAAGTTCTGTGAACGAACTTTTGGATCCAGCTTCTGGAGATGCTGTGAAAAATATTAGTTCTGATGGTTCCGAAAGAAAGTCTAAAAGCACAACTCCTTTGCGATTGAGGCACAAGGGGGATGGAATTACTGATCAATTTTCTAAAATCAGAGCTCACTTAAGATATTTGTTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAATTAAAACCTGAGAAGGAGATTCAACGGGCTAAGTCAGAAATTCTTCGACGTAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCACTATGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAGTGCCAGTCCAAAGAGTTAAGCATCAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCATTGTTAACAGAAGACAAGGATGTGGAGGTTGAAGGAGGTGAGTCAAGTTCTGATGAATCGGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACACCATGAGGATCAATACTTGGGCCTTCCGTCTGACGATTCAGAGGATGACGATTTTGATCCTAATGCTCCAGATCTTGACAATAAAGTCAAGGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTAAAGATAACACTGGACAGGATGAAGACATCATATCTGCATCAGTGGATGATGTTAAGAACTTTAAAGGTTCTAGCAAGCAAAAACGCGAAGTTGGTAAGAAGCCATCTATGGCTGATGAACTGTCATCTTTACTGAAGGCAGATCCTGGCCAAGAGGCTTCCACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGGCTTACCAAAGTGACGACACTACTAGTGATGATGAAGATTGGACTGACACTGCTACTCCAAGAAGAAAAAAGAATCTTGCTGGCAAAATGACTTCAGGGTCACCAAATGGAAATGCCTCAGATAATGCTACACATACTCCTAGGAGGAACATCCATCAGAATAAAGTTGAAGATACATTTAATTCACCTACTAAATCACTTAAAGGGTGTTTGGAGTCTGGTTCCAGAGATAAAAAACCTGGATCTTCAACATACAAAAGACTTGGAGAAGCTGTAGTTCAGAGACTTCACCAATCTTTTAAAGAAAATCAATATCCAGATCGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTTCAGCAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGAATTCATCACATATGGCGACCGGTCCAGGTAGAAATGCATCACAGCAGGTCACTGACAGCCAAGCTGAAAATAAGGGTGAGAAGGAATGTGAATTAGTAACCCAGGAGGTCAATGGAGAAAAATCAAAAACCCCAAGCTCTATAAAAAGGAAGCGTTTGTCTGAACCACAGGGATCTGAAGCACAGGTGGATGTTGATGGCACAGCAATGCCTCCTTGCTCACCAAGAGCTGATGAAAGTCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2118 0.4127 MTSATGKSTSLNVSTTEQMGTEQCELSEKTHQIGSECLDSEQRVLGTVLTSSAIDEKSTQVSANNTENSVIQLPAPPQHCSEESCQVVEGSCLQQSTFEQVPVHLSNDKSENKCQTLSQNVQNAPVEISDAGIGFVAVDQMQSVPSQVTTSSVNELLDPASGDAVKNISSDGSERKSKSTTPLRLRHKGDGITDQFSKIRAHLRYLLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKEIQRAKSEILRRKLKIRDLFRNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQSKELSINNDIILCDGACDRGFHQLCLDPPLLTEDKDVEVEGGESSSDESEYASASEKLEDSHHEDQYLGLPSDDSEDDDFDPNAPDLDNKVKEESSSSDFTSDSEDLAAAIKDNTGQDEDIISASVDDVKNFKGSSKQKREVGKKPSMADELSSLLKADPGQEASTPVSGKRNVERLDYKKLYDEAYQSDDTTSDDEDWTDTATPRRKKNLAGKMTSGSPNGNASDNATHTPRRNIHQNKVEDTFNSPTKSLKGCLESGSRDKKPGSSTYKRLGEAVVQRLHQSFKENQYPDRTTKESLAQELGLTFQQVDKWFGNTRWSFRNSSHMATGPGRNASQQVTDSQAENKGEKECELVTQEVNGEKSKTPSSIKRKRLSEPQGSEAQVDVDGTAMPPCSPRADESQIGNKMKTRKRK 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi362g00042 705 MobiDBLite consensus disorder prediction 341 361 - -
Sebi362g00042 705 CDD homeodomain 569 616 IPR001356 GO:0003677
Sebi362g00042 705 SUPERFAMILY Homeodomain-like 559 618 IPR009057 -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 656 670 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 328 396 - -
Sebi362g00042 705 Pfam Homeodomain 566 610 IPR001356 GO:0003677
Sebi362g00042 705 ProSiteProfiles 'Homeobox' domain profile. 569 615 IPR001356 GO:0003677
Sebi362g00042 705 Gene3D - 558 622 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 635 649 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 1 26 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 423 566 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 423 438 - -
Sebi362g00042 705 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 113 325 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 505 523 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 613 705 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 375 390 - -
Sebi362g00042 705 SMART HOX_1 557 619 IPR001356 GO:0003677
Sebi362g00042 705 SUPERFAMILY FYVE/PHD zinc finger 276 322 IPR011011 -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 154 182 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 613 634 - -
Sebi362g00042 705 MobiDBLite consensus disorder prediction 464 479 - -
Sebi362g00042 705 FunFam Homeobox protein HAT3.1 557 626 - -
Sebi362g00042 705 CDD PHD_PRHA_like 286 332 IPR045876 -
Sebi362g00042 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 331 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi362g00042 Sebi-Chr362 625548 631625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi362g00042 325 612 Homeobox Transcription Factor Family AT3G19510 37.710 1.89e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi362g00042 Homeodomain 6.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi362g00042 - - mtr:25485369 636.336