Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi362g00035 ATGACGAGCGCTTCAGAGCTATTCCACATCAGGAGGCACCGACTAGGACGAAATGCTCTCGATCTAGGGTTCGACTCCTCTCCTCCTCCTGACCATCGTTTTCACGACTCCGACGGTGATGATTCTCTCCGTATCCGCCGCCACTACCACCTGCGTCGCCTCCGTCAACCGGAGCGTGCATCTGATAGAAATGATAGGAGATATCGCCGGTCTCTCTTTAATGATTCTGCAGAGAATAATGTTAGAGGCACTCTTAGAGCGAGTGCCAGTGACAGACTACCCGTAGGTGTGCTACTTGCCAGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTCGCTAGAAACAGGCAATATGGTAGAGATTCTACGGATGAGGATCAAGAAAGTGAACTGTCAAGTGAAGTTCCAACTGGGGGCTTTTTAGTTGCTGACTTGACTTCTCAAATGGGAAGGTCCCAGCTCTTGCAAGAACTAAACAAAAAGCCACCTGGACTCACCCAGGAGGCCTTGGACTGTTTGCATCTGGAAGTTTTTAGCAGCGGGGAGACAAGATTAGAATCCAGGGTACTGCAGGATTGTGGCATATGCTTGGAATCTTTCACAGATGGAGATGAGCTGATACGTTTGCCATGCGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGTAGAAGATGTATAGTTGTAAATATTCACTCTCCAAAAAATGAGGCTGAGCAGTCTTTACATTGA 765 0.4824 MTSASELFHIRRHRLGRNALDLGFDSSPPPDHRFHDSDGDDSLRIRRHYHLRRLRQPERASDRNDRRYRRSLFNDSAENNVRGTLRASASDRLPVGVLLARARLLQRLRGEPLARNRQYGRDSTDEDQESELSSEVPTGGFLVADLTSQMGRSQLLQELNKKPPGLTQEALDCLHLEVFSSGETRLESRVLQDCGICLESFTDGDELIRLPCGHKFHSACLDPWIRCCGDCPYCRRCIVVNIHSPKNEAEQSLH 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi362g00035 254 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Sebi362g00035 254 MobiDBLite consensus disorder prediction 21 40 - -
Sebi362g00035 254 Pfam Ring finger domain 193 235 IPR001841 -
Sebi362g00035 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 239 IPR013083 -
Sebi362g00035 254 MobiDBLite consensus disorder prediction 115 134 - -
Sebi362g00035 254 SUPERFAMILY RING/U-box 193 241 - -
Sebi362g00035 254 SMART ring_2 194 234 IPR001841 -
Sebi362g00035 254 CDD RING-H2_PA-TM-RING 193 235 - -
Sebi362g00035 254 PANTHER SI:CH211-59O9.10 23 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi362g00035 Sebi-Chr362 522172 524592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi362g00035 1 239 C3H Transcription Factor Family AT1G49850 42.636 2.18e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi362g00035 - - gmx:548042 323.168