Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi362g00022 ATGGATCCTGTTGAGCAAACTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACAGCTGAAGAAGCTGATTTTATGAGGCAGTTGCTTGGTAACTGCTCAGTCCCTGAGCAAGTCTATGAAAATTACAATTTGGAAATTCCATCTGCATTATGGCCTGGCCATGAATCCACAATAGTGACTGTCACAGGCATCAATAGCTCTTCACATTTTTCTGCAGATACTGATAATAGTCATTCTAATTTTTTTGCCTTTCTACAAGGAAGTAGTACCTCCATTGCTGATAGTAGAAATGTATTTCCTACTACAAGTGATGGTAACTGCTGCTTGAATGATACAGTAGCCAATATTGGCTACATGTCCATGAGTGATGATGCCAAATTCAACCCATGTAGTGTTCAAGGGAATGACAGCCAACAGATAAATGAAAACATGGATGAAGAGTTAGCTCTGCAGGCTCACAAGGAATGTGAAGAAATGGTTTCTGAACCAGCTGAAGAGGATATAACCAGCAACCTGGAAAAGTCAGGAAAAAGATCTAGGACCTCAATGGAGGAGCTAAATGGAGGAGGGTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCTCTGAAATTAAAGGGAAAATCAAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTGGTCCCCAATGGAACCAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGAGTCTCATTCATGTTTTCCCATATTTGATTTCAATTGAACAGCTTCTGAGCTCTGACGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAATAA 942 0.4002 MDPVEQTSEEWSSLSGLYTAEEADFMRQLLGNCSVPEQVYENYNLEIPSALWPGHESTIVTVTGINSSSHFSADTDNSHSNFFAFLQGSSTSIADSRNVFPTTSDGNCCLNDTVANIGYMSMSDDAKFNPCSVQGNDSQQINENMDEELALQAHKECEEMVSEPAEEDITSNLEKSGKRSRTSMEELNGGGSSSLSLKDSVALKLKGKSRSSRGSATDPQSVYAKKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKSLIHVFPYLISIEQLLSSDDLWMYAPIAYNGMNIGLDLNITPTK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi362g00022 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Sebi362g00022 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 302 - -
Sebi362g00022 313 Pfam Helix-loop-helix DNA-binding domain 225 265 IPR011598 GO:0046983
Sebi362g00022 313 MobiDBLite consensus disorder prediction 168 182 - -
Sebi362g00022 313 MobiDBLite consensus disorder prediction 206 225 - -
Sebi362g00022 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 274 IPR036638 GO:0046983
Sebi362g00022 313 MobiDBLite consensus disorder prediction 161 195 - -
Sebi362g00022 313 CDD bHLH_AtIND_like 216 292 - -
Sebi362g00022 313 FunFam Basic helix-loop-helix transcription factor 216 273 - -
Sebi362g00022 313 SMART finulus 221 270 IPR011598 GO:0046983
Sebi362g00022 313 Gene3D - 215 273 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi362g00022 Sebi-Chr362 345878 347403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi362g00022 10 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 41.408 5.65e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi362g00022 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi362g00022 - - gmx:100817334 386.341