Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi361g00059 ATGGCTATCCGTGTTACCTTCTCCTTTTCCGGCTACGTCGCCCAGAATCTCGTCTCCTCCGCCGGAGTTCGAGTCGCCAATTCTCGTTGCGTCCAAGAATGTTGGATCCTCTCTCGCTTCTTCGGAACTAACCAGAAACCAGACATCAACTCCGCCGGCGGCGTACGCAATTTCTATTCCGATCTCAGAAGGCCTAAATCCAATTCTTGGGCTGGAAACTCTGCTTGTGCCTCTGCCTATTCTACCCTCGCCGGAGAAATTCTCGGCGACAGCTGTAAGAACCCAATTATCTTAGGTTTGATTTCGATGATGAAGTCAACGGCTGGTGTTTCTGGGTCATCCACGGCGGCTATGGGTATAATGGGTATTTCTCCTCTTAAAACCTCTTCGATCATACCCTTCTTTCAGGGTTCGAAGTGGCTTCCTTGTAATGAGTCCCTTCCTGACCCCACAACATGGGAAGTGGATAAAGGTGGAACGCGCAGTGTTGTGAACGCGCAATCGGGTTTAAACGCAAGGGATTATGAGAGGCCTAGTTGGCTTTCGCGTTTTCTGAATATCTGTTCAGAGGATGCCAAGGCTGCGTTCACTGCTTTAACTGTTAGTGTCCTCTTCAAGTCTTTCTTGGCTGAACCTAAATCAATTCCCTCTGCTTCTATGTACCCAACTCTGGAAGTAGGTGACCGTGTTCTAACAGAGAAGGTTTCTTACTTCTTCAGAAGGCCTGATGTTTCAGATATAGTGATATTTAAAGCGCCACCCGGTGCGCAGGCATATGGTTATAGTTCATATGATATATTTATAAAAAGGGTTGTGGCTAAAGCTGGTGACCTTGTTGAAGTTCGTGGAGGGAAACTATTGGTGAATGGTGAGGCTGAAGAAGAGGAATTCGTTTTAGAGCCTCTTAATTATGAGATAGCTCCAATGGTTGTTCCAAAAGGACATGTTTATGTGCTGGGAGACAATCGTAACAAGAGTTTTGATTCTAGTTACTGGGGTCCACTCCCTATCGAGAACATTGTTGGTAGATCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTAACACTAACACCCTTCAGAACCTCCCACCTGGAAACAATGCTGTGGCAACTTCTTGA 1122 0.4652 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKPDINSAGGVRNFYSDLRRPKSNSWAGNSACASAYSTLAGEILGDSCKNPIILGLISMMKSTAGVSGSSTAAMGIMGISPLKTSSIIPFFQGSKWLPCNESLPDPTTWEVDKGGTRSVVNAQSGLNARDYERPSWLSRFLNICSEDAKAAFTALTVSVLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKVSYFFRRPDVSDIVIFKAPPGAQAYGYSSYDIFIKRVVAKAGDLVEVRGGKLLVNGEAEEEEFVLEPLNYEIAPMVVPKGHVYVLGDNRNKSFDSSYWGPLPIENIVGRSMFRYWPPSKVSNTNTLQNLPPGNNAVATS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi361g00059 373 FunFam Peptidase/ serine-type peptidase 217 348 - -
Sebi361g00059 373 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Sebi361g00059 373 NCBIfam signal peptidase I 194 350 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi361g00059 373 PANTHER SIGNAL PEPTIDASE I 155 356 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi361g00059 373 Pfam Signal peptidase, peptidase S26 192 349 IPR019533 GO:0004252|GO:0006465
Sebi361g00059 373 SUPERFAMILY LexA/Signal peptidase 207 356 IPR036286 -
Sebi361g00059 373 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Sebi361g00059 373 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi361g00059 373 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi361g00059 373 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi361g00059 373 CDD S26_SPase_I 211 343 IPR019533 GO:0004252|GO:0006465
Sebi361g00059 373 Gene3D Umud Fragment, subunit A 205 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi361g00059 Sebi-Chr361 1056676 1058417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi361g00059 220 350 MADS-box Gene Family AT1G29960 31.061 9.87e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi361g00059 K03100 - gmx:100817525 528.865