Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi361g00046 ATGGTAATGCAGCATCACATGTTGCCACCTCAACATTATGCACCGCCGCCACCGCAGCCCTACATGCCTTATCACCAGTACCAACCACAGGTGCCACATGTTCCACACCCTCATCAGGGATCCAGCATCGAGAACAAGACGATCTGGGTTGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGGCACAGCTGAGAAAGTTTTACAGAGTTATGCTGCAATCTTGATGCCTAACACAGAGCAGCCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAACATGTTGCATGAAACTTTTGCTACTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAAGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTAAGGCTATGACTGAAATGAATGGTATTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCGTCTGGCTACCAGCAAGGAGGCCAGTCAAATGGCACATCAAACCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTAATGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATTGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGCTAAATGGCACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTTGATTTCGGCAATCCCTGGAGTGGGGCGTATTATGGAGGACCTGTTTATGATGGTTATGGATATGGTTTGCCGCCTCCTCATGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGACACCAACAACAAAATCCCTCCTAA 1128 0.4468 MVMQHHMLPPQHYAPPPPQPYMPYHQYQPQVPHVPHPHQGSSIENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQSYAAILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDNMLHETFATRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMTEMNGIYCSSRPMRIGAATPRKSSGYQQGGQSNGTSNQSEADSTNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRVDFGNPWSGAYYGGPVYDGYGYGLPPPHDPSIYAAAYGAYPVYGGHQQQNPS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi361g00046 375 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 39 320 - -
Sebi361g00046 375 FunFam Polyadenylate-binding protein RBP47B 45 125 - -
Sebi361g00046 375 MobiDBLite consensus disorder prediction 215 244 - -
Sebi361g00046 375 SUPERFAMILY RNA-binding domain, RBD 7 126 IPR035979 GO:0003676
Sebi361g00046 375 FunFam Polyadenylate-binding protein RBP47 230 346 - -
Sebi361g00046 375 Gene3D - 45 125 IPR012677 -
Sebi361g00046 375 SMART rrm1_1 47 122 IPR000504 GO:0003723
Sebi361g00046 375 SMART rrm1_1 140 214 IPR000504 GO:0003723
Sebi361g00046 375 SMART rrm1_1 245 312 IPR000504 GO:0003723
Sebi361g00046 375 MobiDBLite consensus disorder prediction 219 244 - -
Sebi361g00046 375 SUPERFAMILY RNA-binding domain, RBD 138 316 IPR035979 GO:0003676
Sebi361g00046 375 FunFam Polyadenylate-binding protein RBP47B 127 229 - -
Sebi361g00046 375 CDD RRM3_NGR1_NAM8_like 243 314 - -
Sebi361g00046 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Sebi361g00046 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 109 IPR000504 GO:0003723
Sebi361g00046 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 309 IPR000504 GO:0003723
Sebi361g00046 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 218 IPR000504 GO:0003723
Sebi361g00046 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 316 IPR000504 GO:0003723
Sebi361g00046 375 Gene3D - 126 235 IPR012677 -
Sebi361g00046 375 Gene3D - 236 346 IPR012677 -
Sebi361g00046 375 CDD RRM2_SECp43_like 138 217 - -
Sebi361g00046 375 CDD RRM1_SECp43_like 47 127 - -
Sebi361g00046 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi361g00046 Sebi-Chr361 793766 797304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi361g00046 33 324 Eukaryotic Initiation Factors Gene Family AT4G34110 27.815 1.09e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi361g00046 - - gmx:100777830 608.216