Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi361g00006 ATGTCTGAAGCCTTAGAATTTGATTGTGGATCTACATCAAGTAATGCTACTGCAGATCAGCAGATTTGCTGGAATAATGTGCGGAATCCTGCAGAAAATCAAATACCTGATTATATACTCTCTCCTAGTGATATAAACCCATCTTATATGAATTCAATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGAGGGCCAAGTTCCAGTAATGCGCCAAATGAACTTGACAATAACGGGCAGAAAAGAGAGCTTGGATGGTCATCATCCATAAGTGCTGGTGCATTAGCTGGTCCAAGGCTAGAAGACAGGCGCCTTGAACCAAGCAATGCTCTTTCGCTGAACAATGTCAATACTGGTCCGGTGTATATGCGCAACTCCAATTCTCATTTGATGTCCCAGAATCTAAACTTAAATGCAGGTTTAACAGACAGTGGCAGTGATGATAGTCAACATCTGGAGCACCCTAACTTACACAAGTCTAGTGAATCAGTAAATGAGTGTAGTCCACCTATCATTGGTTCTGGTTCTTTTCCGCTTGCTTCTGGAAATAATGGCTTTCTGGTAGAAGATACTGATGGTAGGCCAGGTTTTTCTCTGGACACTCGACATGTGTCTTGTAAAAGAAAAGCTGTTGAAGTAAATACTGGACAATCTTCAGATGGTGGCAGTTCTAGCTACAGTCAGCATACAGATGGTAGTCGTTGGCACACCATTCTTACTCAGGGTAATGCTGGGAGCAGTTCAAGCAGGTCTATTTCGTCAGGGCAGTTGAATGCAAGGCTTGGCCTGGCTATGGGGGATGAAGCCTCTGAAAGTGTTCCTGATTCAGACATTGGAGGAAGCTCAGAAAGCTTCCACAGGAATTTACGTTTGAGGATAAATCCTTCAAACCAACAAAATTCCAATCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATCCTGGTGTTCCTTCTTCCTCTCAAGTGTCACAAAGATTTCACCCTGTTGATAATTCTCTGTACTTGAGGTCAGCTCCAGTGATAGATAATATAATTCCTCAAAGTCAGCCACTTGTAATGCATGTGCCTGCTTTGCCAAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACATGCATTCGTCAAACTCAATTATATGTGCAGACAGGGATAATCTACCACAGGAGGATGCAAACTCAAGAAGCGTGTCTGGAAATATTTTAGAACAGCCAGTATTTGTACCTCCAACTGATCTAAGAAATTTGGTTCAAAATCCAACATTTAGAGCTTCAAGTTCAAGTAGTGCAAATTTAAGCATTCCAGGAAATGTTGCTTCTTCATCAAGGACTGGATCAAATTCAGCTACCAATCCCTCATCTGGCTCAACCTGGGTCTCTCGTACTAATCCTCCACAGCATCCCCGGAGGTTATCTGAATATGTCCGTCGCTCCTTGTTTTCTCCTGGTTCTGATGCTACTGGAGGTCCAAGCAACAACAATTCTTCCTTGCGCTCTGGTCCTTCTACATCTGAATTGAGGGCGTTATCAACAGGGGCCCACTCAAGATCATCTTCATGGTTGGAGAGGCAAGGAGACAGTGACTTTGGGATTCCCTATTCATTACGTACTTTAGCTGTTGCGAGTGAAGGCAATGGTAGACTTCTATCTGAGCTCCGCAATGTATTGGGCATTATACGTAGGGGTGGGAACCTTCGATTTGAGGATGTTATGATCCTTGATCAATCAATGATTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCGTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTCAGTACTGGATTGAGTGAGGAAACAATATTGAAACTTTTGAAACTGAAGAAGTACTCAATTGAAACAGGATCTCAGCTTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTACAGTGATGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAACAACTGTATTAAACAGTGGTTAATGCATAAGAATCTGTGTCCCATTTGTAAAACAACGGGCTTGTCAACATGA 2097 0.4258 MSEALEFDCGSTSSNATADQQICWNNVRNPAENQIPDYILSPSDINPSYMNSINHEWQNLSGWSLGGPSSSNAPNELDNNGQKRELGWSSSISAGALAGPRLEDRRLEPSNALSLNNVNTGPVYMRNSNSHLMSQNLNLNAGLTDSGSDDSQHLEHPNLHKSSESVNECSPPIIGSGSFPLASGNNGFLVEDTDGRPGFSLDTRHVSCKRKAVEVNTGQSSDGGSSSYSQHTDGSRWHTILTQGNAGSSSSRSISSGQLNARLGLAMGDEASESVPDSDIGGSSESFHRNLRLRINPSNQQNSNPPTAFSTGSMIRHPGVPSSSQVSQRFHPVDNSLYLRSAPVIDNIIPQSQPLVMHVPALPRNRQSFRWSGGSSSRNMHSSNSIICADRDNLPQEDANSRSVSGNILEQPVFVPPTDLRNLVQNPTFRASSSSSANLSIPGNVASSSRTGSNSATNPSSGSTWVSRTNPPQHPRRLSEYVRRSLFSPGSDATGGPSNNNSSLRSGPSTSELRALSTGAHSRSSSWLERQGDSDFGIPYSLRTLAVASEGNGRLLSELRNVLGIIRRGGNLRFEDVMILDQSMISGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKLKKYSIETGSQLDAEPCCVCQEDYSDGDDIGTLDCGHDFHNNCIKQWLMHKNLCPICKTTGLST 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi361g00006 698 MobiDBLite consensus disorder prediction 491 529 - -
Sebi361g00006 698 MobiDBLite consensus disorder prediction 139 174 - -
Sebi361g00006 698 MobiDBLite consensus disorder prediction 294 328 - -
Sebi361g00006 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 695 IPR013083 -
Sebi361g00006 698 FunFam E3 ubiquitin-protein ligase MBR2 619 696 - -
Sebi361g00006 698 SUPERFAMILY RING/U-box 638 694 - -
Sebi361g00006 698 MobiDBLite consensus disorder prediction 429 529 - -
Sebi361g00006 698 MobiDBLite consensus disorder prediction 65 85 - -
Sebi361g00006 698 SMART ring_2 651 691 IPR001841 -
Sebi361g00006 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 204 697 IPR045191 GO:0061630
Sebi361g00006 698 MobiDBLite consensus disorder prediction 429 474 - -
Sebi361g00006 698 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Sebi361g00006 698 MobiDBLite consensus disorder prediction 213 233 - -
Sebi361g00006 698 Pfam Ring finger domain 651 692 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi361g00006 Sebi-Chr361 93601 98230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi361g00006 25 698 C3H Transcription Factor Family AT2G15530 33.380 1.61e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi361g00006 - - gmx:100783014 1072.38