Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi35g00042 ATGGCTTTGGTTCCAGCATGTGTTCACAACATTAAGAGCTTGTGTGGATGGAAAGAGAACTGGAGGTTGGTTGTTAAACTTGTGAGGGTGTGGAAAATGAGTTCTGTAGCTGCCCCACACGACCCGTATGCTACTCAGATGGTGTTCCTTGATCAGGAGGGTTCAAGGATTGAGGCTACCATTCAGAAGCATCACATGCTGAAGTTTGCCCATGCAGGTGTTGAGGGAGAGGTGTACAAGGTGGCTAATTTTGGGCTTATGCGTAACGTGGGAAAATTCCAAGCAGCATCACATGATTTCAAGCTTATCTTAAATGCCAGCACCAAAATGGTGCCCTGCCCAAACTACTCTATTCCTTGCTTAGGATTGTCACTTGTGAAGACCTCCGACATTGTAAAAACTAATTGGCGCTCTGAATATTTGCTAGACTTCATGGGGGTGCTGTTGACAGTTTCTGAGGAGATGATTTTGAGCAAGGAAGGACGTAAAACCCGCCTAATGTTGCTAGATTTGGTAGATGACATGGGTCAGATTCATTGTGCACTCTTTGGAGACTTGATTGATGTTGTATCTGGATATCTCTCTCAATCTAATATTGGTCTTCCTGTAGTGGTTATACAGCTTGCAAGGGTAAACTTTTATAAGGGAGGCTACCCAGTGCCCAGTTATGTTTACAATTACTTCCTTATTCCCAGGGCAAGTTGGCTTGCTGTCCATGAGGTGGAATCTGATGTGCGCATAGGCACCATAAAAAACAGGCCTCGCCCCCTTTGCATGAGGGAGGAGTTTTTGAAAATGTACCCAAAAAAGAGTTTGGGGCAGTTCCTCGAGACCCTTGAGGAGGGTTTCTTTGTTTTGTTGGGAATGGTCTCAGAGATTGTGCATGAGTCCTTATGGTGGTATATGGCATGTCCATGTATGAAAGCGGTTTCCTATGCGCCAGGAGTGCCTTACTGTGAATATTGTCAAACAATTGTGTTGGACTTGACTCCTAGGTATAAGCTGAAAATGGTTGTGTCTGACGGTGTAGACAGTGCTCAATTCATCCTCTTTGACTCAGAGTATTACGCCATGCTGAATAAGCCTTGTCGGGAATTGGTCTCACATAATAAGTGTCTTCAGTTAGGTGAATACCCAAGGGAAATAACAGACTTGGTGGGGAGGGAATTTCTGTTTCAAGTGGAGAAGAAGGACGACATTATATTTGGCCTTGATGAGTCCTACAAGGTGAAAAGGGTGTGCTGTGATATTGATCTAAAATTCGCCCCTGCATTTAGCAAGATAGGATCAAGTGATGCTCCTAGCGGCCATAGCAGTGAAACACCTGAGACCAATTCCATTGTCACCATTCTTGATGTATCCCCAGAGGCATGCGGCCAATCTTCTACCACACATGAGGATTTTGGAGATGCGAAGAAAATAAAACTTGAAGGCCCTGTTGATGGTCCTGCACAGCGACCAAAGAGAGGGAAAGTGAAGGCAGCCAAACAGGAGAAGCCTTGA 1503 0.4498 MALVPACVHNIKSLCGWKENWRLVVKLVRVWKMSSVAAPHDPYATQMVFLDQEGSRIEATIQKHHMLKFAHAGVEGEVYKVANFGLMRNVGKFQAASHDFKLILNASTKMVPCPNYSIPCLGLSLVKTSDIVKTNWRSEYLLDFMGVLLTVSEEMILSKEGRKTRLMLLDLVDDMGQIHCALFGDLIDVVSGYLSQSNIGLPVVVIQLARVNFYKGGYPVPSYVYNYFLIPRASWLAVHEVESDVRIGTIKNRPRPLCMREEFLKMYPKKSLGQFLETLEEGFFVLLGMVSEIVHESLWWYMACPCMKAVSYAPGVPYCEYCQTIVLDLTPRYKLKMVVSDGVDSAQFILFDSEYYAMLNKPCRELVSHNKCLQLGEYPREITDLVGREFLFQVEKKDDIIFGLDESYKVKRVCCDIDLKFAPAFSKIGSSDAPSGHSSETPETNSIVTILDVSPEACGQSSTTHEDFGDAKKIKLEGPVDGPAQRPKRGKVKAAKQEKP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi35g00042 500 SUPERFAMILY Nucleic acid-binding proteins 123 221 IPR012340 -
Sebi35g00042 500 Gene3D - 117 227 IPR012340 -
Sebi35g00042 500 MobiDBLite consensus disorder prediction 466 488 - -
Sebi35g00042 500 Pfam Replication factor-A C terminal domain 283 400 IPR013955 -
Sebi35g00042 500 SUPERFAMILY Nucleic acid-binding proteins 279 401 IPR012340 -
Sebi35g00042 500 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Sebi35g00042 500 CDD RPA1_DBD_A_like 22 110 - -
Sebi35g00042 500 Gene3D - 265 418 IPR012340 -
Sebi35g00042 500 CDD RPA1_DBD_C 283 413 IPR047192 -
Sebi35g00042 500 Gene3D - 7 115 IPR012340 -
Sebi35g00042 500 MobiDBLite consensus disorder prediction 457 500 - -
Sebi35g00042 500 Pfam Domain of unknown function DUF223 47 140 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi35g00042 Sebi-Chr35 1581416 1583874 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi35g00042 8 354 Core DNA Replication Machinery Family AT5G08020 23.306 1.58e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi35g00042 - - lja:Lj6g3v0884310.1 294.278