Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi359g00010 ATGGGTTGCATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAAAGAGGATATCACAAAGAAATTGCAATCATGTAGCACAAGGCCTTCAGAGTTGAATGTTTTGAGATTGAATTCCAGCAAGAGGGTTGAGGGGGGTCGGGTGAAAGATACGCCATTAGGTGGAGGTGATGTGAAAGCTTCATTGATTGACAAGAAAGTCAATGGCTCAGTGCAATTGTATGTTGATCCAAATGGGAAGAAGAAAATAGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGGGAAGCTATCAAGGGATGGATACCACGGAGTGCAAATACTTTTGAGAGGTCACATAAAATTGGCCAAGGAACTTATAGTACTGTTTATAAGGCACGCGATGTGACCAATCAAAAGATTGTTGCATTGAAGAGGGTGCGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGACTCAACCATCCAAACATAATAAAGTTGGAGGGCTTGATAACTTCAGAGACGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGTATCAAATCCTAGCATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGATAACAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCAGTCATAGTATTCCATTGACAAGCCGTGTTGTAACTCTGTGGTATAGACCACCTGAACTTCTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCTCTGGTTGCATACTGGGGGAACTATATACTGGGAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCGCCATCTGAGGACTATTGGCTTAAATTGCGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCTGAAACATTTAAGGAATACCCATCTACTGCTATTAAGCTTATAGAGACCCTACTTTCAGTAGATCCAGCACATCGAGGGACAGCTGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCAGTTGGAGGCAGGGAGCAAAAAGTTGGCTCAGGAGTTAGGCAAGAAAAAGGACATAGGGCCTATGCCACCGCAAAAGACAATGCTGACCCAGGCATATCAATACAGCAAGGGCAACGTTATTCTAGCTCAAAGAACCGGAGTGAATTGTTCTACACTCATAGAGAACCTGTGTCTGGCCACAAACAGTCAGAAGATGTTAAAGAAATGGACAATTATTTCTCTGGGCATCTTTATAAGAAGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGGCAAGGGCTGGGAAGGAAGTTGATGATGGGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACATTGTTGTCTGAAGACCAGGAGGAAAAACCAGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGGCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCGGTCAAATGGAAAATAGAAGGGTCCCCACTGAAAGTCAACTCCGGTCAGTTGCTGATGGACATGGGTCCAGGGGAAACAAGATATACCTCTCTGGTCCTTTACTGGTTCAATCAAGCAACATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCCAGAGCAAGAGGTGAGAAAGTCCGTGCACAGAGAAAGTAG 2097 0.4416 MGCICSKSSAVEDSKEDITKKLQSCSTRPSELNVLRLNSSKRVEGGRVKDTPLGGGDVKASLIDKKVNGSVQLYVDPNGKKKIEKPELTVIDHPGLGRVPKAAEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERSHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLNHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLVSNPSIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPSHSIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVAETFKEYPSTAIKLIETLLSVDPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVGSGVRQEKGHRAYATAKDNADPGISIQQGQRYSSSKNRSELFYTHREPVSGHKQSEDVKEMDNYFSGHLYKKPSHSGPLVPGSGWARAGKEVDDGPPVSNRVNLSKLSGLVASRTLLSEDQEEKPVHLHHRKPIEVRKSVEATNGSESRRRQDQKRIVDLGQMENRRVPTESQLRSVADGHGSRGNKIYLSGPLLVQSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi359g00010 698 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi359g00010 698 MobiDBLite consensus disorder prediction 673 698 - -
Sebi359g00010 698 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Sebi359g00010 698 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Sebi359g00010 698 CDD STKc_CDK9_like 135 419 - -
Sebi359g00010 698 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Sebi359g00010 698 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi359g00010 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Sebi359g00010 698 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi359g00010 698 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Sebi359g00010 698 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Sebi359g00010 698 MobiDBLite consensus disorder prediction 450 472 - -
Sebi359g00010 698 MobiDBLite consensus disorder prediction 673 691 - -
Sebi359g00010 698 SUPERFAMILY Protein kinase-like (PK-like) 129 427 IPR011009 -
Sebi359g00010 698 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi359g00010 Sebi-Chr359 130890 137415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi359g00010 127 462 Core Cell Cycle Gene Families AT5G10270 48.580 8.96e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sebi359g00010 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi359g00010 - - gmx:100807590 1160.98