Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi358g00029 ATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGATAGCTTTCATTTTGAGAGGTTGCACATCGAGCCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCTTTGACTCTGCAAGAATTAAGAAGCACTGAACTGAATCCAAGTATGGCTTTGCGCAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCTTTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGCACATCTGTCGAAGAAGTCGGTCAAATAAGCACAATATCCGCAATGCAGGGCTTATACCAATGATCGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGCTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTTGAGGAAGATGATGAGAATAAGGTTGGCACAGGTTTGCTGGAATTGTTGGCCGAAGGGGACACTGTGCGTACGGTCGTAAAATTCCTTTCACACGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTTTATGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATCTTTCCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTACTGACCCAGCTCCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGAACAATGATGTTAAAGTCATTGTTGCTAGAACTGCAGGTCCGTCTCTGATCAATATAATGAAAAGTGGTAATTTGCAGTCAAGAGAAGCTGCGCTGAAGGCACTAAATCAGATATCATCATGTGATCCAAGCGCAAAGGTTTTAATAGAGGCTGGCATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCACACGATTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTTAACTCAGGAGAAGACTTTGATTCCATTCCAGTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTAGTTCTCCAACTACAGTGCTGAGTGTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTCCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAGACTTCTTCAGAATTTGTCTCCGCACATGGGTCAGGAACTAGCTGATGCACTGCGTGGCTCAGTTGGACAGCTTGGTAGTCTAGTTAAAGTGATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGATTTGGGCCTCACAAGGCAGCTACTGGATGAAGGTGCCTTTCTGACAGTCATATCTAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCGCTCGCTTTGTGACACCGGTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACATATGTTTTGGCTGATGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCTGCACTGTTTATTGAACTGCTTCAGGCCAATGGACTCGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATCTATCGCAAGAATCAAGAAATTTAACCAAATTGCCCGAGTTGCCACCGCCAGGTTTTTGTGCTTCAATCTTTTCTTGCTTCAGCAAACAGCCAGTCATTACTGGATTGTGTAGGATCCACCGAGGGAGGTGTTCTTTGAAAGAAACATTTTGTCTTTATGAAGGGCAGGCAGTCGTTAAGTTAGTAGCTCTACTGGATCACACAAATGCGAGTGTGGTTGAGGCGGCACTTGCAGCCTTATCTACTATAATAGATGATGGAGTAGATATTGAACAAGGAGTATTGGTTTTGTGTGAAGCAGAGGGAGTGAAACCTATACTTGATGTGTTACTTGAGAAACGGACAGAAACTCTGAGGAGGAGAGCAGTTTGGGCAGTGGAGAGGCTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGAGATCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGACAGATTGCTGAACGTGCTCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGAATCTTTCCTAACATGGGATGA 2460 0.4435 MAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTTRNEAAQLDMARRSLNMGSPENETLQALKYVQHICRRSRSNKHNIRNAGLIPMIVDMLKSSSRKIRCRALETLRIVVEEDDENKVGTGLLELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDLSTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGILGELVLNNDVKVIVARTAGPSLINIMKSGNLQSREAALKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPVGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASLRLLQNLSPHMGQELADALRGSVGQLGSLVKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFLTVISRVIAIRQGEIRGARFVTPVLEGLVKIVARVTYVLADEPDAIALCRDHNLAALFIELLQANGLDNVQMVSATALENLSQESRNLTKLPELPPPGFCASIFSCFSKQPVITGLCRIHRGRCSLKETFCLYEGQAVVKLVALLDHTNASVVEAALAALSTIIDDGVDIEQGVLVLCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi358g00029 819 Coils Coil 262 282 - -
Sebi358g00029 819 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Sebi358g00029 819 CDD RING-Ubox_PUB 30 87 IPR045210 -
Sebi358g00029 819 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 815 - -
Sebi358g00029 819 Gene3D - 106 315 IPR011989 -
Sebi358g00029 819 SUPERFAMILY RING/U-box 23 110 - -
Sebi358g00029 819 SUPERFAMILY ARM repeat 464 807 IPR016024 -
Sebi358g00029 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 105 IPR013083 -
Sebi358g00029 819 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Sebi358g00029 819 Gene3D - 578 808 IPR011989 -
Sebi358g00029 819 SMART arm_5 596 637 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 313 352 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 139 179 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 272 312 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 678 719 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 452 493 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 723 765 IPR000225 GO:0005515
Sebi358g00029 819 SMART arm_5 353 398 IPR000225 GO:0005515
Sebi358g00029 819 Gene3D - 316 492 IPR011989 -
Sebi358g00029 819 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Sebi358g00029 819 SUPERFAMILY ARM repeat 120 450 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi358g00029 Sebi-Chr358 786964 790288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi358g00029 2 819 U-box Gene Family AT1G76390 65.244 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi358g00029 - - gmx:100789746 1443.33