Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi358g00022 ATGAGCTGCTTTTCTTGCCTCTTTTCTCGTCGGAAAGATGTCAGTAGGGTTGAAGTTGATAATGGCACTCGATCTGCTACTTCTTCAGGGAACGGGGGAGTCAATGCTGCCGCTACTGATAAGGAGGGTGAAAGGAAGAAAGAATCCTCAGAGGGGAAGGGGAAGAGTGGGAGCAGTAGCAAAAGCAGTACGGCAGCAGCTAGTTTTGGATTTCGTGAGCTTGCAGCGGCAACAAGAGGTTTTAAGGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGAGTTTACAAGGGTCGTCTCTCTACAGGAGAGGTTGTTGCCATAAAACAATTAAATCATGATGGTCATCAAGGTTTTCAGGAATTTGTGACAGAGGTTCTTATGTTAAGCCTGCTTCACCATTCTAATCTTGTTAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCCCTGGAAGACCATCTTTTTGATCTTAATCAAGACAAAGAACCCCTAAGTTGGAGTGCCCGAATGAAGATTGCTGTTGGAGCTGCTCGGGGCCTTGAGTATCTGCACTGTAAGGCAGATCCCCCCGTTATTTATCGTGACTTGAAATCTGCAAACATCTTGTTAGACAATGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCAAAAACTTGGACCTGTGGGAGACAATACCCATGTTTCAACGAGAGTGATGGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGACTCTAGTAGAAGACCAGGAGAGCAAAACTTAGTTTCTTGGTCTCGTCCATTTTTTAGTGACCGGAGAAAGTTTGTACATATGGTTGATCCTCTTTTGCAAGGAAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCGAAATTCCGTCCACTTATCAGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGACTCAGAGTATCCCTGAAGTCCATAGACATGGTTCAGAAATAGACAGAAATTAA 1065 0.4404 MSCFSCLFSRRKDVSRVEVDNGTRSATSSGNGGVNAAATDKEGERKKESSEGKGKSGSSSKSSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGEVVAIKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLNQDKEPLSWSARMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKTWTCGRQYPCFNESDGFGVVLLELITGRRAIDSSRRPGEQNLVSWSRPFFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLISDIVVALEYLASQTQSIPEVHRHGSEIDRN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi358g00022 354 FunFam Protein kinase superfamily protein 157 231 - -
Sebi358g00022 354 MobiDBLite consensus disorder prediction 13 63 - -
Sebi358g00022 354 FunFam probable serine/threonine-protein kinase RLCKVII 53 156 - -
Sebi358g00022 354 MobiDBLite consensus disorder prediction 39 54 - -
Sebi358g00022 354 MobiDBLite consensus disorder prediction 20 35 - -
Sebi358g00022 354 PANTHER OS07G0668900 PROTEIN 26 234 - -
Sebi358g00022 354 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Sebi358g00022 354 Pfam Protein kinase domain 81 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi358g00022 354 Gene3D Transferase(Phosphotransferase) domain 1 245 344 - -
Sebi358g00022 354 Gene3D Phosphorylase Kinase; domain 1 40 156 - -
Sebi358g00022 354 Gene3D Transferase(Phosphotransferase) domain 1 157 244 - -
Sebi358g00022 354 SMART serkin_6 81 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi358g00022 354 SUPERFAMILY Protein kinase-like (PK-like) 58 332 IPR011009 -
Sebi358g00022 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Sebi358g00022 354 ProSiteProfiles Protein kinase domain profile. 81 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi358g00022 Sebi-Chr358 593873 596722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi358g00022 1 336 Glycoside Hydrolase AT3G07070 53.022 1.30e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Sebi358g00022 Pkinase 2.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi358g00022 - - gmx:100796595 494.197