Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi358g00018 ATGGGAAACTGTTTCGGAAAGCCAGATGATGACAACAACATGATTCACAGTAAGCAGACTACTACAACCACCACACACACTTCTCCTGCAGAAAGAAACAATATTGAGAAGGAAAGGGTTTCAGATGGAGAAAAGAGTAGAGGGAAGATCGTTACGCCGAATCTGAAAATGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCAGACACGGTGGTTGGGGAAGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATTGATCCTAATACCTTCAAGCCTTCCAGAGTTGGCGTTGGAATCCCCGTTGCTGTCAAGAAGTCTAACCCTGATAGCCTCCAAGGTCTACAAGAATGGCAGGTACGAGGCCCTGAACCACTTTCGTGGGATATAAGGCTCAAGATAGCCATAGGAGCTGCCAGAGGTCTGGCTTTCTTGCACACGTCAGAAAAATCTGTCATCTATAGAGACTTCAAATCCTCCAACATTTTGCTTGACCAAAATTTTAATGCAAAGCTGTCAGACTTTGGGTTGGCAAAGTTGGGCCCCGTCAACGGTAGATCCCACATAACCACGCGGGTCATGGGCACCTATGGTTATGCTGCCCCTGAGTACATGGCCACAGGTCATCTCTATGTGAAAAGCGACGTATATGGATTTGGTGTTGTTCTGTTAGAATTGTTAACAGGCTTAGCAGCACTGGACACAAATCGGCCAACGGTTGAGCAGAATCTGGTGGAATATACTAAGCCATGTCTAAGTGACAAAAAGAAACTAAAAAGGATAATGGACCCAAGGATGGACGAACAGTACTCAATAATAGCAGCACTTCAAATAGCCCATCTTATTCTGAAATGTTTAGAATCTGACCCAAAAAACAGACCGTCTATGGAGGAGGTTTTGGGAATCTTAGAGAAGGCCCAAAACATCAAATATAAGCCCAAAGTGAAGAAAGCCAGTGCAGTGCATCAAAGAAAGAGATCACCAGAGGAGCATCCCACACAAAATCAACTTCGCACTCCTATTCATCACAACAACAATGGTTACTCCAAATCACGAACTCATTCCCCCCAATAG 1083 0.4451 MGNCFGKPDDDNNMIHSKQTTTTTTHTSPAERNNIEKERVSDGEKSRGKIVTPNLKMFTLDELKSATRNFRPDTVVGEGGFGRVFKGWIDPNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQVRGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDQNFNAKLSDFGLAKLGPVNGRSHITTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLELLTGLAALDTNRPTVEQNLVEYTKPCLSDKKKLKRIMDPRMDEQYSIIAALQIAHLILKCLESDPKNRPSMEEVLGILEKAQNIKYKPKVKKASAVHQRKRSPEEHPTQNQLRTPIHHNNNGYSKSRTHSPQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi358g00018 360 Gene3D Transferase(Phosphotransferase) domain 1 120 332 - -
Sebi358g00018 360 ProSiteProfiles Protein kinase domain profile. 1 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi358g00018 360 Pfam Protein kinase domain 136 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi358g00018 360 MobiDBLite consensus disorder prediction 316 360 - -
Sebi358g00018 360 PANTHER OS01G0588500 PROTEIN-RELATED 29 122 - -
Sebi358g00018 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Sebi358g00018 360 SUPERFAMILY Protein kinase-like (PK-like) 55 327 IPR011009 -
Sebi358g00018 360 MobiDBLite consensus disorder prediction 336 360 - -
Sebi358g00018 360 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 110 320 - -
Sebi358g00018 360 MobiDBLite consensus disorder prediction 1 32 - -
Sebi358g00018 360 MobiDBLite consensus disorder prediction 15 30 - -
Sebi358g00018 360 Gene3D Phosphorylase Kinase; domain 1 40 119 - -
Sebi358g00018 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi358g00018 Sebi-Chr358 509274 511524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi358g00018 11 306 Glycoside Hydrolase AT3G07070 38.776 1.27e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi358g00018 Pkinase 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi358g00018 - - aprc:113865973 514.998