Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi358g00017 ATGGGAGATGGTGCTGTGCCATCATCTGCAACCATGATGGAAGCTCCACCTGAAGGAACCCCAATGGATTTTGATTACATGAGTGAACTTTTCTTAGATGGTTGTTGGTTGGAAGCCTCTGCTGATGGATCTGATTTCTTGCTGCAAAGTCCTCCTTTTTCCAATCCCCTCTTTGACCCTTCATTCTCTTGGCCTGCCTTAGAGACCAATGAGCCACCACAAGATGGGAATCAACATGAATCCCAAGAAGCTCCTCTTGGCACCCAACCAGAAAGCCATGAAATGGTTAATGTTGCTGTTGCTGGTAGTTGTAATCAGCAGTATCAGTCTGAAACTGAAGGTGCATCTGAGATGGTCAGAAGGTGGTGGATTGCACCTACACCTAATCCAGGACCTGGATTTTCCATAATGGAGAAGCTGATAAGGGCACTCAAGTGGATCAGAGATTTCAATAGCAACAAAGATATGCTTATACAAATATGGGTGCCAACAGTTCATAGTGAGGATAATAGGCCAATTCTAACAGCTAATGATCTTCCCTTTTCACTTGAAACCAGGTCTGGAAACCTTGCAAAGTACAGAGAAATCTCTGTGAGATATCGGTTTTCAGCAGAGGAGGATTCAAAGGAGATGGTGGCAGGATTGCCTGGTAGAGTTTTCAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTCGATTCTTTAGGAGTGAAGAGTACCCTCGAGTTGACCATGCTAAAAGGAATGATATCTGTGGAACCTTAGCAGTTCCAATCTTTGAACAAGGTAGCAGGACATGCTTAGGTGTTATTGAGGTTGTGATGACAACTCAGCATATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGTTGTTGATCTCAGAAGCTCGAAGCATTCAAGTATTAAGAATGTGAAGGTAAGCAACCAGTCCTATGAAGCTGCACTACCCGAGATTCAAGAGGTGCTGAGATCAGCATGTGAAATGCACAAATTACCTTTGGCTCAAACTTGGGTCTCATGCATCCAACAAGGCAAAGATGGGTGCAGACACAATGAAGATAACTATTTACACTGTATATCTCCTGTGGAACAAGCTTGCTATGTTGGTGATCAATCTGTCAGGTTTTTTCATGAGGCTTGCATTGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCATGCTTCTCAACTGATATTACTTCCTTAAGCAAAACAGACTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGAGGGCCGCAGTTGCCATACGCCTCAGAAGCATCTATAGTAATACAGATGACTATGTTCTCGAGTTCTTCTTGCCTGTAGATTGCATTGACAGTGAAGAACAGAAAAATATGCTTACATCATTGTCCATGATCATACAAAGGGTTTGCCACAGCTTGCGGGTTATAAGAGATAAGGAGTTGGAGGAAACTGACTTATCCACTGATGAAGTAATAGCCCTTGCAGATAGTGGATTTACTAGGACTGCAATTTGTTCAGAACTCCAAAACAGAATGATGGTTCCCTCATTGGGTACTGAAGAAAACTCAAGTGAAACAATGAGTAGAAAATTCTCTGATCTAAGGCAGCAACAAGAAAATCTTATTTTAAAAGGAAACCTTGACTGTGGTAGGGAGTCTTCTACCTTTGTTGAGGGTAACTTGTCAAGTGTGGGAATAAGTAAAACTGGAGAGAAAAGACGGGCCAAAGCAGATAAAACTATCACTCTGCAAGTTCTTAGGCAATATTTTGCTGGAAGCCTTAAAGATGCTGCTAAGAATATCGGTGTTTGTACTACAACTCTGAAAAGGGTCTGCCGGCAACATGGTATAAAGCGTTGGCCATCTCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTACTCAAAATTCCCGGATCTAGCTTCTCCAAACATATCAGGAACCAGCTTGATCTCAGCTTTGAATCAAAGTGATAATCCAAACTCATTAAGCACACAGCCAGATCCTGGGTCATTGAGTCCAGAAGGTGCATCAAAATCACCCTCTTCCTCATGCAGTCAGAGTTCCTTCTCAAGCCATTCCTGTTCCAGCATGTCAGAGCAACAACCTCACACAAGTAATGTTGCTGGTTACAAAGATTCTACAATTGGTGAAGATTCTGTTGATGTTGTGTTGAAGAGGATAAGAAGTGAAGCAGAGCTTAAAAGCCTTATTCAAGACAGAAAAAAACTCTTGCCAAGATCCCTAAGCCAGGAAACACTTGGAGAACACCCTAAAACAAATTATCACAGGCCATTTATGAAAACCAGTGGCAAGGAGGATGCTCACAGGGTAAAAGTAACATATGGAGATGAGAAAAGCCGGTTTCGGATGCCAAAGAATTGGGGTTATGAAGATCTTTTGCAAGAAATTGGTAGGAGATTCAGTGTCAGTGACATGAGCAAATTTGATATCAAATATTTGGATGATGATTGTGAGTGGGTGCTACTAACCTGTGATGCTGATTTAGAAGAATGCATTGATGTTTGTCAATCTTCTGAGAGTAATACCATCAAACTTTGCCTACAAGCTTCTAGACATTGTATGGGAAGTTCTTTTTAG 2691 0.4203 MGDGAVPSSATMMEAPPEGTPMDFDYMSELFLDGCWLEASADGSDFLLQSPPFSNPLFDPSFSWPALETNEPPQDGNQHESQEAPLGTQPESHEMVNVAVAGSCNQQYQSETEGASEMVRRWWIAPTPNPGPGFSIMEKLIRALKWIRDFNSNKDMLIQIWVPTVHSEDNRPILTANDLPFSLETRSGNLAKYREISVRYRFSAEEDSKEMVAGLPGRVFRDKVPEWTPDVRFFRSEEYPRVDHAKRNDICGTLAVPIFEQGSRTCLGVIEVVMTTQHINYGPELESVCKALEVVDLRSSKHSSIKNVKVSNQSYEAALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHNEDNYLHCISPVEQACYVGDQSVRFFHEACIEHHLLKGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSNTDDYVLEFFLPVDCIDSEEQKNMLTSLSMIIQRVCHSLRVIRDKELEETDLSTDEVIALADSGFTRTAICSELQNRMMVPSLGTEENSSETMSRKFSDLRQQQENLILKGNLDCGRESSTFVEGNLSSVGISKTGEKRRAKADKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLASPNISGTSLISALNQSDNPNSLSTQPDPGSLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQPHTSNVAGYKDSTIGEDSVDVVLKRIRSEAELKSLIQDRKKLLPRSLSQETLGEHPKTNYHRPFMKTSGKEDAHRVKVTYGDEKSRFRMPKNWGYEDLLQEIGRRFSVSDMSKFDIKYLDDDCEWVLLTCDADLEECIDVCQSSESNTIKLCLQASRHCMGSSF 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi358g00017 896 PANTHER PROTEIN NLP8 85 895 IPR045012 GO:0003700
Sebi358g00017 896 MobiDBLite consensus disorder prediction 1 20 - -
Sebi358g00017 896 SUPERFAMILY CAD & PB1 domains 797 890 - -
Sebi358g00017 896 Gene3D - 806 887 - -
Sebi358g00017 896 ProSiteProfiles PB1 domain profile. 805 888 IPR000270 GO:0005515
Sebi358g00017 896 MobiDBLite consensus disorder prediction 59 86 - -
Sebi358g00017 896 ProSiteProfiles RWP-RK domain profile. 576 657 IPR003035 -
Sebi358g00017 896 MobiDBLite consensus disorder prediction 681 743 - -
Sebi358g00017 896 CDD PB1_NLP 806 887 IPR034891 -
Sebi358g00017 896 Pfam RWP-RK domain 589 637 IPR003035 -
Sebi358g00017 896 MobiDBLite consensus disorder prediction 67 86 - -
Sebi358g00017 896 SMART PB1_new 805 888 IPR000270 GO:0005515
Sebi358g00017 896 Pfam PB1 domain 806 887 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi358g00017 Sebi-Chr358 459020 462966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi358g00017 18 890 NLP Transcription Factor Family AT1G20640 48.871 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi358g00017 PB1 9.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi358g00017 - - gmx:100785135 1347.41