Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi356g00071 ATGGCGTATCAAGCGATTCAGGGCCCGAGTTCGGGATCGAGTTCGAGTTCGGGTTTTCAACTATTGACCTCTCCTTTCGGCGACACCACGTACACCAAGGTCTTCGTTGGAGGATTGGCTTGGGAGACTCAGAGCGAAACCATGCGCCGTTACTTTGAGCAATTTGGTGAGATTCTCGAGGCCGTCGTGATCACTGATAAGAACACGGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGAAGAGCCTGTGCTGATCCGACTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGACCCCCTATGTCCTATGGACGGGTAAGACCAGCCTCCCCTTTTGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCACTCTCCTATGGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACCTGAATACATCTATCCACAGAGTCTGTACAACCCATATATGGGTCAACAGTACCTTCAAATATATGGAGTGCCTGGGGCAGTGAATACAACTATTTATCCGTATGGACAATTAGGTCAATCTATTCCTAGTGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGATCCAATGTCAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGCGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTCTTGTTCCTGCTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGGTGA 855 0.4877 MAYQAIQGPSSGSSSSSGFQLLTSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPMSYGRVRPASPFVGSLQPARGAYVGGFGYQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQSLYNPYMGQQYLQIYGVPGAVNTTIYPYGQLGQSIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQAPYPSGIAAPVPGQPQFLVPASPQFMQGSGPDQTAG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi356g00071 284 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Sebi356g00071 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Sebi356g00071 284 SMART rrm1_1 33 105 IPR000504 GO:0003723
Sebi356g00071 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Sebi356g00071 284 Gene3D - 4 122 IPR012677 -
Sebi356g00071 284 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
Sebi356g00071 284 PANTHER BOULE-RELATED 10 244 - -
Sebi356g00071 284 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi356g00071 Sebi-Chr356 1001383 1004310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi356g00071 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 2.85e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi356g00071 - - gmx:100779244 535.413