Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi356g00039 ATGGCTTCTGCAGAAATTGAGTACCGTTGCTTTGTTGGTGGGCTAGCCTGGGCCACCGACAACGATGCCCTCGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTCGAATCGAAGGTTATCAACGACCGTGAGACTGGAAGGTCGAGAGGCTTTGGATTTGTCACCTTCGCTACCGAGCAGGCCATGAGGGATGCTATCGAAGGGATGAACGGCCAGAATCTTGATGGCCGTAACATCACTGTGAACGAGGCTCAGTCCCGTGGTAGGGGCGGCGGTGGCGGTGGCGGACCGTGGTTATGGAGATGGGTGGATCCCGCTACTCAAGGGGAGGTGGTGCTTCCGACGGCGGAAGCTGGAGGAGTTAAGTTTGCGTTGAATTTAGGTTTTAGTTGGTGA 396 0.5556 MASAEIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGPWLWRWVDPATQGEVVLPTAEAGGVKFALNLGFSW 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi356g00039 131 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Sebi356g00039 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Sebi356g00039 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Sebi356g00039 131 SMART rrm1_1 9 82 IPR000504 GO:0003723
Sebi356g00039 131 PANTHER GEO13361P1-RELATED 7 94 - -
Sebi356g00039 131 Gene3D - 2 105 IPR012677 -
Sebi356g00039 131 FunFam Glycine-rich RNA-binding protein GRP1A 2 99 - -
Sebi356g00039 131 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi356g00039 Sebi-Chr356 518556 519402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi356g00039 11 119 C2H2 Transcription Factor Family AT2G19380 35.714 1.78e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi356g00039 - K13195 gsj:114414485 173.711