Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi356g00008 ATGGCGCCGAAGCAGAGCACAAGGAAGGTTAGCAGAAACCCTGAATTGATGAGGGGAATCAGAAAGTACTCGAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCTATCAAGGCAAAAAACGGCGGCGTTTTACCTCGCCACGATCCCAAACCTAAACCTCAAGCTCCTGCTCAGAAACCACCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCATCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCCGGAACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTTTTTTTGAAGCAGCTTCCTTCTGGTTTGCTTCTTGTAACTGGTCCTTTTAAGATTAATGGAGTTCCTTTGAAACGCGTGAACCAGTCCTATGTGATTGGCACCTCAACCAAAGTGGATGTCTCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTTGCAAAGGAAGCCCAGGAAAAGAAGAAGAAGGGAGAAGGAGAGTTCTTTGAGGCTGAGAAGGAGGAGAAAAATGTGTTGCCCCAGGAGAAGAAAGATGACCAGAAAACTGTCGACTCTGCATTGGTAAAGGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTGGGTGCCAGGTTTTCTCTTAAGGCAGGCATGAAGCCCCACGAGCTAGTCTTCTAG 702 0.4701 MAPKQSTRKVSRNPELMRGIRKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPQAPAQKPPKFYPADDVKKPLINKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLKRVNQSYVIGTSTKVDVSAVNVDKFDDKYFAKEAQEKKKKGEGEFFEAEKEEKNVLPQEKKDDQKTVDSALVKAIESVPDLKAYLGARFSLKAGMKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi356g00008 233 MobiDBLite consensus disorder prediction 172 197 - -
Sebi356g00008 233 CDD KOW_RPL6 81 233 IPR041997 -
Sebi356g00008 233 MobiDBLite consensus disorder prediction 40 85 - -
Sebi356g00008 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Sebi356g00008 233 Coils Coil 162 182 - -
Sebi356g00008 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Sebi356g00008 233 Gene3D - 87 171 IPR014722 -
Sebi356g00008 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Sebi356g00008 233 PANTHER 60S RIBOSOMAL PROTEIN L6 2 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Sebi356g00008 233 FunFam 60S ribosomal protein L6 87 171 - -
Sebi356g00008 233 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi356g00008 Sebi-Chr356 116354 117774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi356g00008 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.828 2.59e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi356g00008 K02934 - gmx:100499766 389.423