Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi355g00048 ATGGCTTTTTTGGGGAAGAGAATCTGGGAGCTTCATCATAATTCTTCAAAGCTTTGGGTGCAGGCTGGTTCTTGCTTAAAAGATGGTTTCCGGTTCAAAGTTGGCAATGGGGATGTTAGTTTCTGGTATGAGGATTGGAGAAATGAGGGCCCCCTCTGTGATTCAGTTCTATTTGTAGATATCCATGATACCCAAATGCGTGTTCGAGATGTATGGCATGAAGATAGGTGGCACTTGAACCAGCTCTTCACCATTTTATCTTCGGAGATTATTTCTAACTTACAAAATAGAGTCCTTCATCTTAATGATGCTGTACCAGATGTCATTCACTGGGAGCCTAATATATCAGGTGTTTATTCAGTCAAGGAGGGTTACAAGTGGCTGATGAATAGAGATTTTCAAGCCTTTTCTACAGAGGCATGGGACTGGATCTGGAAGATGAGAACCACCGAGTCCATCCGATTTTTCTGCTGGTTGCTAAACCATGGTGCGCTGCCAACGAAGCTGCTTTTATTCAGGAGGCATATGCTGAGAATTCAATTCACGGACCGCGAGCTTACTCTTCCCTTTCGGGATTGGATCTTTAATGGATACAAGAGACATGGTGATTTGTTTTGCGTGGCTTTGTGGGTGATGTGGTGCAATAGAAACCGAGTCTGTTTTGAAGGAGTCAGTCAACGAACTCAATTTCTTCTCCCGCAAGTTCAGTCTTTGGTTAGTGGTCTTCGAGACAGTTTTGCTCCTCGTGAGATGGCATCTCTTGCGGAGCCAATGATGATTAAGTGGATCACTCCCTCCTTTGGTGCGGTAGCTCTTAACACAGATGGAAGCTACCAAGGGAGTTCGGGTCGTGCTGGATTTGGAGGGCTTGTCCGTGATCATCTTGGATGCTGGTCGTTTGGTTTTTTAGGGAATGCAGGGGATAAACCGATTTTATGGACAAAATTATGGGCTATTGCTGAGGGTTTAAAGCTGGCTTGGAACCGTGGTTTTCGCGTGGTAGAATGCTTCTCAGATTCTTTGTTAGCAATTCAACTTATTCTTTCAGGGAATCTTCAGTGCATTGGAGGTTCGTCTATGGAGAGGAATGGGGTGAGCAATGATTACAGTTCAGAGGATGAAGGCACTGAGGGTTATAGGCGTGGAGGATACCATGCAGTTCGAGTTGGTGACATTTTCAAGAATGGCTGCTATGTCGTGCAGTCCAAGCTCGGTTGGGGTCTTTTTCCACTGTCTGGCTCGCTTGGGACACTCTCCATTCGGTGCCTCCTCTCTCCTAAGAATGCTTTTGAACTTCATCGTTCCCGTTATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCGTTGGATGAAATAAAGATTCTCAAACAAGTTGCAGAGGGAGACCATGATGACAAGAAATGTGTTGTGAAGCTATTGGATCACTTTAAGCATTCGGGGCCTAATGGGCTGCATGTGTGTCTGGTTTTTGAATTTCTTGGTGACAATCTTCTCACCCTTGTCAAATACAGTGGCTATCGTGGGGTTCCTCTCCCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTAGATTACTTGCACCGTGAGCTTTCAATCATACACACTGATCTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAGATCCATACAAGGATCCTAGGAAATCAGGTGCTCCACTTATCCTTCCAACTACTGAGGATAAAGCTGTGTCCAATAATGAGACTACCAAAGACAATAAAATTTTGAATGGGGATCTGATGAAGAACCAGAAAAAGAAAATGCAGAGAAAGGCTAGGAAGGCAGCTCAAGGCTGTGTTGAGAAGGAAAGTCCAGAGGAAGCTGAGGAGGATTATAAAGAACCGGAGGAAGAAGATTGTATTAATGGTATGCAATCAAGTGTAGAATGTGTTGAAGATAAACTTAATACTTCATTGAGTGAAGGTGAATCAACAAAAACTGTTGAGAAGGATGTTTCACAAGGAAGTCATGGTCACAAGAGCCGTTCCAAGGGAAAGAAGTTGCTGGCGGCTGCTGATCTTAAGTGCAAGCTGGTTGATTTAGGTAGTGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCGGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGGGATGAAGTGGTGAAAACTATGATAGGGATGAGAGTAGTTGCTATACAATTCAATGCTGTACCTTTTCATGATCGTATAATTTTATGCTGGGAAATGCTTCAAAGCATACTTCTGCTGACTTTAAGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGGTAGGCAAGTTATCTGCACTGCTGAAAACTTTAAAGTGCTGACAGAGAAGTATGATTTCAGTGATCAAGATGCAAATGACATGGCTGACTTCCTTGTTCCAATACTTGATTTTGTCCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATCAGTGCAGGTCCTCGGACCCTTGAGTCCTCAATGACAATTTTGCGACTGGATGCCATCAATGAGGAATTGTCTGAAAAGAGGAAGAGGGAAAAGGCTGAGCAGGAGTTAGTGGAAGTTGGTGTGAGGAATATAGCCATTAATGGAACTCCTGAGTTACTCAAGGACTCCCAACCTCTAAAGTCATCGAAATAG 2802 0.4358 MAFLGKRIWELHHNSSKLWVQAGSCLKDGFRFKVGNGDVSFWYEDWRNEGPLCDSVLFVDIHDTQMRVRDVWHEDRWHLNQLFTILSSEIISNLQNRVLHLNDAVPDVIHWEPNISGVYSVKEGYKWLMNRDFQAFSTEAWDWIWKMRTTESIRFFCWLLNHGALPTKLLLFRRHMLRIQFTDRELTLPFRDWIFNGYKRHGDLFCVALWVMWCNRNRVCFEGVSQRTQFLLPQVQSLVSGLRDSFAPREMASLAEPMMIKWITPSFGAVALNTDGSYQGSSGRAGFGGLVRDHLGCWSFGFLGNAGDKPILWTKLWAIAEGLKLAWNRGFRVVECFSDSLLAIQLILSGNLQCIGGSSMERNGVSNDYSSEDEGTEGYRRGGYHAVRVGDIFKNGCYVVQSKLGWGLFPLSGSLGTLSIRCLLSPKNAFELHRSRYVALKIQKSAQHYTEAALDEIKILKQVAEGDHDDKKCVVKLLDHFKHSGPNGLHVCLVFEFLGDNLLTLVKYSGYRGVPLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPYKDPRKSGAPLILPTTEDKAVSNNETTKDNKILNGDLMKNQKKKMQRKARKAAQGCVEKESPEEAEEDYKEPEEEDCINGMQSSVECVEDKLNTSLSEGESTKTVEKDVSQGSHGHKSRSKGKKLLAAADLKCKLVDLGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGENYDRDEVVKTMIGMRVVAIQFNAVPFHDRIILCWEMLQSILLLTLRSSGIDDGASWNDASQGRQVICTAENFKVLTEKYDFSDQDANDMADFLVPILDFVPEKRPTAAQCLSHPWISAGPRTLESSMTILRLDAINEELSEKRKREKAEQELVEVGVRNIAINGTPELLKDSQPLKSSK 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi355g00048 933 SUPERFAMILY Protein kinase-like (PK-like) 430 878 IPR011009 -
Sebi355g00048 933 MobiDBLite consensus disorder prediction 652 678 - -
Sebi355g00048 933 Gene3D Transferase(Phosphotransferase) domain 1 671 870 - -
Sebi355g00048 933 Pfam Reverse transcriptase-like 273 348 IPR002156 GO:0003676|GO:0004523
Sebi355g00048 933 FunFam SRSF protein kinase 2 isoform X3 679 872 - -
Sebi355g00048 933 Gene3D Transferase(Phosphotransferase) domain 1 466 559 - -
Sebi355g00048 933 ProSiteProfiles Protein kinase domain profile. 398 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi355g00048 933 CDD RNase_H_like 272 351 IPR044730 -
Sebi355g00048 933 Gene3D - 268 372 IPR036397 GO:0003676
Sebi355g00048 933 SUPERFAMILY Ribonuclease H-like 270 349 IPR012337 -
Sebi355g00048 933 MobiDBLite consensus disorder prediction 609 633 - -
Sebi355g00048 933 Gene3D Phosphorylase Kinase; domain 1 384 497 - -
Sebi355g00048 933 Pfam Protein kinase domain 429 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi355g00048 933 Pfam Protein kinase domain 682 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi355g00048 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Sebi355g00048 933 MobiDBLite consensus disorder prediction 658 672 - -
Sebi355g00048 933 SMART serkin_6 398 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi355g00048 933 Coils Coil 883 906 - -
Sebi355g00048 933 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 367 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi355g00048 Sebi-Chr355 781528 786964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi355g00048 361 919 EF-hand Containing Proteins AT5G22840 56.370 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Sebi355g00048 Pkinase 3.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi355g00048 K08832 - gmx:100790060 702.975