Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi355g00043 ATGTCTCGCCGTGGTGGTGGTAGGCAATCCCAATCTCGCTATGATCAACCTTCTCTGGCCCAGTCTGTCGGAAGAGGCCGTGGTCGCGGCCGTGGACATGCACCCCCTCCGCCGTCGTCCGTTCCTCTTCCGTCTCCGGCGATCGCGCCAGTTGCTGCCTCAAGTTCGTCGTCCCCGCTGCCGTCTCCGGTTCCAGTTGAAACTCTGACTTCAGAGGTTGAGCAGAAGCTCACATTGCAGTCGTCGGCTCCGTCGTCGACGAAGGCTTTCAGGTTCCCTGACCGGCCAGGTTACGGTACAGAGGGAAGGAAAATCCAAGTCCGAGCGAATCATTTTCAACTGCAAGTTGCTCAGTGCGATCTACATCACTACGATGTATCGATAACTCCGGAGATTCCTTCCAAGAAAGTGTCTAGAGATGTGCTGGGCCAGTTAATCCGCATGTATCAAGAGACACACTTGGGTAGGCGTGTACCCGCTTATGATGGACGAAAGAGTCTTTTTACTGCAGGTCCATTGCCCTTTTCCTCAAAGGACTTTGTGGTCAAGTTGGTTGACGATGACGAGCGAGGCTCGCCTTCTGGTTCTGCTAGAACAAAACGTGAGCGCGAGTTTAAGGTCACTATACGGTTCGCTGCAAGGGCTGACCTTCACCATCTTCAGCAGTTTCTCAGGTGCCAACAGCTGGACAGTCCACAGGAAACCATACAAGCGCTTGATGTTGTTTTGCGGGCAACACCTTCTGAAAAGTATAATGTTGTGGGAAGGTCCTTTTTTTCTCCTACTTTGGGGTCAACAGATGTTTCAGCGAGAGCTTTTTATGAACCAGTTCTTGTTACTGAATTTATTGCTAAACATTTTAGATTAAATTTTTCAAGGCCTCTGTCTGATCAAGATCGTGTTAAGGTTAAGAAAGCTCTGAGAGGTATAAAGGTGATACTTAGTCATGGCAAGTTTACACTTGATGACAAAAGAACAAAAGTTTCGGTTGTTCAATATTTCCGTGAGAAATACAATATTGTGTTAGAGTGTTTGGCTCTTCCTGCTCTCCAAGCTGGAAGTGACACAAAACCTATTTATTTGCCTATGGAGCTTTGTCAGATCACAGCTGGACAGAGATACACTAAAAGATTGAATGAAGAACAAGTGACTAATCTTCTAAGGGCTACCTGTCAGCGTCCTCATGAAAGGCAAAATTACATTAAACAGATTGTGAGGGAGCACAATTTCAACACAGACAAGTTTGTGCGTGAGTTTGGGATTAATGTAAGGGAGGATCTTGCATTGGTTAATGCCCGTGTTTTGCCTCCCCCAACGCTTAAATATCATGAATCAGGCAAAGAATCTAAAGTTGACCCAAGGATGGGTCAGTGGAATATGATTGACAAGAAAATGATTGATGGTGGCAAGGTGCAATATTGGACTTGCCTAAGCTTTTCAGCGAAAGTAAACAGAGAAAGAGACTGGACAGCTAGATTTTGTAGTGAATTGGTCAATATGTGTACCAGCAAGGGAATGCTATTCAATCGAGACCCTTTAATTCCCATAACTCCAGGTTACCCTAATCAAATAGAGACAGCACTCATGAACGTCCATAAGCAGAGCATGTCAAAACTTGCAAACTTGAAGCAGGGGGGGCCAATTCAGTTGTTAATTATAATTCTGCCTGATGTCAAGGGCTCTTATGGAAAAATAAAGAAAATATGTGAAACAGAACTGGGGATAGTATCTCAATGTTGTCAACCCAGGCAAGTTTTAAAGTTGAATAAGCAGTATCTTGAAAATGTAGCCCTGAAGATTAATGTGAAGCCAGGGGAAGACTCAAGTCCTTCTATTGCTGCAGTAGTGGCTTCCATGGATTGGCCTTGGGTTACAAAGTATAGGGGAATTGTTTCTGCCCAGCATCACCGCCAAGAAATTATTCAGGATCTTTATAAAAAACATGAAGATTCTAAGAAGGGAGTTGTACATGCTGGAATTGTCAGGGAGTTAATCCGATCCTTCTATAAATCAACTGGGCATAAACCTCGAAGAATTATATTCTACAGAGATGGAGTGAGTGAGGGACAATTTAGTCAGGTTTTGCTTTATGAGATGGATGCAATAAGAAAGGCTTGTGCCTCGTTAGAGGATGGATATCTACCTCCAGTTACATTTGTGGTGGTACAGAAAAGACATCACACCCGTCTCTTCCCTGTTGATCGTAATCAGACAGATAGAAGTGGAAATATAATGCCAGGGACTGTTGTAGACACATCCATCTGCCACCCTCGGGAATTTGACTTTTATCTCAATAGCCATGCTGGAATTCAAGGAACTAGTCGACCAACTCATTATCATGTATTGTATGATGAAAACAAATTCACTGCGGATGAGTTGCAGATTTTGACAAATAATTTATGTTATACGTACGCAAGGTGTACTCGGTCGGTTTCAATAGTTCCTCCTGCATACTATGCACACTTGGCTGCTTTCCGAGCTCGCCACTACATTGAAGGTGAAACTTCGGAAGCTGGTTCTGCGAGTGGAAGTGGAAGTGGAGGTGGAAGCAGAAATACCAACTTCGAGGTGACACTGCCCTCAATCAAGGAAAATGTCAAAGAAGTAATGTTTTACTGCTGA 2622 0.4424 MSRRGGGRQSQSRYDQPSLAQSVGRGRGRGRGHAPPPPSSVPLPSPAIAPVAASSSSSPLPSPVPVETLTSEVEQKLTLQSSAPSSTKAFRFPDRPGYGTEGRKIQVRANHFQLQVAQCDLHHYDVSITPEIPSKKVSRDVLGQLIRMYQETHLGRRVPAYDGRKSLFTAGPLPFSSKDFVVKLVDDDERGSPSGSARTKREREFKVTIRFAARADLHHLQQFLRCQQLDSPQETIQALDVVLRATPSEKYNVVGRSFFSPTLGSTDVSARAFYEPVLVTEFIAKHFRLNFSRPLSDQDRVKVKKALRGIKVILSHGKFTLDDKRTKVSVVQYFREKYNIVLECLALPALQAGSDTKPIYLPMELCQITAGQRYTKRLNEEQVTNLLRATCQRPHERQNYIKQIVREHNFNTDKFVREFGINVREDLALVNARVLPPPTLKYHESGKESKVDPRMGQWNMIDKKMIDGGKVQYWTCLSFSAKVNRERDWTARFCSELVNMCTSKGMLFNRDPLIPITPGYPNQIETALMNVHKQSMSKLANLKQGGPIQLLIIILPDVKGSYGKIKKICETELGIVSQCCQPRQVLKLNKQYLENVALKINVKPGEDSSPSIAAVVASMDWPWVTKYRGIVSAQHHRQEIIQDLYKKHEDSKKGVVHAGIVRELIRSFYKSTGHKPRRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEDGYLPPVTFVVVQKRHHTRLFPVDRNQTDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYIEGETSEAGSASGSGSGGGSRNTNFEVTLPSIKENVKEVMFYC 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi355g00043 873 FunFam protein argonaute 10-like 597 873 - -
Sebi355g00043 873 Pfam Argonaute linker 2 domain 396 442 IPR032472 -
Sebi355g00043 873 MobiDBLite consensus disorder prediction 837 855 - -
Sebi355g00043 873 FunFam Argonaute 10 434 609 - -
Sebi355g00043 873 MobiDBLite consensus disorder prediction 1 19 - -
Sebi355g00043 873 SUPERFAMILY PAZ domain 272 410 IPR036085 GO:0005515
Sebi355g00043 873 CDD Piwi_ago-like 414 831 IPR045246 -
Sebi355g00043 873 ProSiteProfiles Piwi domain profile. 550 603 IPR003165 GO:0003676
Sebi355g00043 873 SMART Piwi_a_2 550 832 IPR003165 GO:0003676
Sebi355g00043 873 CDD PAZ_argonaute_like 279 368 - -
Sebi355g00043 873 MobiDBLite consensus disorder prediction 1 97 - -
Sebi355g00043 873 Pfam Piwi domain 551 605 IPR003165 GO:0003676
Sebi355g00043 873 Pfam Piwi domain 606 831 IPR003165 GO:0003676
Sebi355g00043 873 Gene3D - 604 873 IPR036397 GO:0003676
Sebi355g00043 873 SUPERFAMILY Ribonuclease H-like 539 832 IPR012337 -
Sebi355g00043 873 MobiDBLite consensus disorder prediction 836 855 - -
Sebi355g00043 873 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 86 833 - -
Sebi355g00043 873 Pfam Mid domain of argonaute 453 531 IPR032473 -
Sebi355g00043 873 ProSiteProfiles PAZ domain profile. 319 370 IPR003100 GO:0005515
Sebi355g00043 873 Gene3D - 434 603 - -
Sebi355g00043 873 ProSiteProfiles Piwi domain profile. 605 832 IPR003165 GO:0003676
Sebi355g00043 873 MobiDBLite consensus disorder prediction 50 88 - -
Sebi355g00043 873 SMART PAZ_2_a_3 277 389 IPR003100 GO:0005515
Sebi355g00043 873 Pfam N-terminal domain of argonaute 103 243 IPR032474 -
Sebi355g00043 873 Gene3D paz domain 277 373 - -
Sebi355g00043 873 Pfam PAZ domain 318 387 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi355g00043 Sebi-Chr355 729899 735527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi355g00043 40 873 Eukaryotic Initiation Factors Gene Family AT1G48410 52.637 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi355g00043 K11593 - gmx:100799033 1140.18