Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi355g00019 ATGGCCATTGCTGGTCTGCGTAGTGTGTCTGTACTTGATCCTTCTTTCCTGAGAGACTCCCATTCTCAGTCATCCAGGAGAGGGGGAGATGGAAGAAGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAGGATGAACATGTGGTGAGTCCAGTTCAAGGAAGAGCTGGTGAAGTACTACTTGAACAAAGGAGTGATGGATTGACTGCAGACCTCTCACAGGAGGATACAGTTGATAGCCAAGAATTAGGACAGGGGCATGTTTTAGAAGATGCAGTTTTGGGCGAGAATGAGTCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATGATGGTCATGAGGATTTAAACAATTCCAGCTGTGAAAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATCTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGGATCAAACATTTCCCGAAGAAATAACAGTTCAAGGAGAGAATGGCTCGGTGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCTTCTGGGGAAAACAGGGAAGAACTATCTGCTGAAATTGATATACAAATTGAACGTGTACGTGATGGACTTGTCATTAACCAGAATGAGGGCCAAACTGAGCATATGCGGAGGAGTATCCGTAAATTATGCGGCAGACAGGTTATGCTTGATATGCTCAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCAAGAGTTGTTGGACCATCAGGCTGTTTCTCATTTCCCCCATCGTAATCGCATCCAGGCATTGCTTAGAGGACGGTTCTTGAGGAATGATAGATCTGTTGACCATAACAGGTCCACTTCTGTTGCAGAAAGTGAGTTAGGCTTGTTGCGGCGAAGACAGACTGTATCAGGTCTAAGGGAAGGATTCTTCTCTAAAAAGGACAATACTGGTTGCAGTCAAGCAACTGGCAACCTATCTGATACCTCATCCAACATTGATGTTGATTTCAATACAAACGAACAAACTGGAGCAAGCAGTTCACATATGGTCCTTAGTGTACATTCTGGACAGTCTGAACCTAATAATAGAGGAAGTAATGGACTTGGGATATCAGATGGCCAGAACTGTTTACAAGGAACCACATGTGAGAATTTTGACCGGCAAGACTCTGCTGCTCATGCAGAAAGAGATCAGTTGCAGTGCTTGCAAATTGATCCAGAAGATCGGCAATCATCATTCAGTGTTGGGGTTGAAAGAATGGATGACACTGGCCAAAATGTTGTTGTGTTGCCAGTTGAAGATAGTGCTAATGAACTTACCCATCAAAGCTTACAAATTGAAAACTCAGAGAATAGTAATAATCAGGAATTCAGTGAGGTACATAACGAGCAATCTGAGCTGGGTAATATAGTTAATGGTGAAAATAATTCATCAAATCACAACAATCATATGGAGGTCAATATTGTTGATGACGTGAATTGGATTGAATCTGGTGCTCAAGAAGGAGAACAGACAGAAGATATTGAAAATGAAGTAAGTGGCTGGCTTCACAGTAACATTGAATGGCAAAATAGCACTGATGAAAGCATGGATGATAATCAGATCAGTCATACAACAAATGAGTGGCCTGAAAACAGTTTGGCAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAAGCGCCTGAAGTGTGGCAAGAAGATGGCAGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCGGATCATGAAAGTGCTCCAGGTGGTAGGGTTCATGGTTTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAATCTCCTTCACAGTAGTTTCCGTGAGAGTCTTGATCAGTTGATACAATCCTATGTTGAAAGGCAAGGTCATACTCACATTGAGTGGGAGCTGCAAGAAACAGCCCCTTCTTCTGCCTCGGTAGAACAGGACCTTGAGCAGCAGAGTAGAGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTTCACTTGACTTGCCCTCCTTACCTATACCTCCTCCTCTACCACTTTGGGACCAGCACCCTCATCGTGACAACTGGACACATAATGACATAAATAATCAGCGCCTAGGAATTGATTGGGAGATTATTAACGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAATAACATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACATGACTTTGAGTCACCAGATGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTATGTACTTGTTCGAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCTATGTGTCAAGCACCTGTGGTGGAGGATTCTAACAAGTTTTATCTCCTGGACGTCTCCAGTTTCGATTTGCAACTTCTGTTTCTTTTAGAGGATAGAGATCCCATCCTTTTAATAGATTGTTTTGGCTCTGAAGGGGATGGAGTGCTTGTGTGGCTGTCATGTACCTACGCTGATTTGTGGGGAAACTTGCATATTCTATTCTTAGGCTATGCAGGTTTGTTTATTGATGTAAGCTCTGATGATGGACAGCGTGACCGATGA 2793 0.4322 MAIAGLRSVSVLDPSFLRDSHSQSSRRGGDGRRGSTRSSSLLQMWREIEDEHVVSPVQGRAGEVLLEQRSDGLTADLSQEDTVDSQELGQGHVLEDAVLGENESETWSQSQSQNESHDGHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHGSNISRRNNSSRREWLGETEQERVRIIREWVQMSSQQRSVSSGENREELSAEIDIQIERVRDGLVINQNEGQTEHMRRSIRKLCGRQVMLDMLKKAERERQREIQELLDHQAVSHFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGLLRRRQTVSGLREGFFSKKDNTGCSQATGNLSDTSSNIDVDFNTNEQTGASSSHMVLSVHSGQSEPNNRGSNGLGISDGQNCLQGTTCENFDRQDSAAHAERDQLQCLQIDPEDRQSSFSVGVERMDDTGQNVVVLPVEDSANELTHQSLQIENSENSNNQEFSEVHNEQSELGNIVNGENNSSNHNNHMEVNIVDDVNWIESGAQEGEQTEDIENEVSGWLHSNIEWQNSTDESMDDNQISHTTNEWPENSLANEDGENSRLQEAPEVWQEDGSFQEAVENWLGGPSDHESAPGGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLHSSFRESLDQLIQSYVERQGHTHIEWELQETAPSSASVEQDLEQQSRDQIVGQEGTVNSSLDLPSLPIPPPLPLWDQHPHRDNWTHNDINNQRLGIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDFESPDDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEDSNKFYLLDVSSFDLQLLFLLEDRDPILLIDCFGSEGDGVLVWLSCTYADLWGNLHILFLGYAGLFIDVSSDDGQRDR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi355g00019 930 Coils Coil 736 763 - -
Sebi355g00019 930 Coils Coil 243 270 - -
Sebi355g00019 930 ProSiteProfiles Zinc finger RING-type profile. 808 847 IPR001841 -
Sebi355g00019 930 MobiDBLite consensus disorder prediction 101 137 - -
Sebi355g00019 930 SUPERFAMILY RING/U-box 807 853 - -
Sebi355g00019 930 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 398 852 - -
Sebi355g00019 930 CDD mRING-HC-C3HC5_NEU1 808 852 - -
Sebi355g00019 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 790 857 IPR013083 -
Sebi355g00019 930 MobiDBLite consensus disorder prediction 17 39 - -
Sebi355g00019 930 Pfam Zinc finger, C3HC4 type (RING finger) 805 850 - -
Sebi355g00019 930 MobiDBLite consensus disorder prediction 541 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi355g00019 Sebi-Chr355 309577 314447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi355g00019 808 852 C3H Transcription Factor Family AT3G06140 44.444 3.38e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi355g00019 - - gmx:100801329 1282.32