Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi355g00017 ATGGCGAACGGTACGGATTCGGAGCAGTTTGTGGTGCTTTCTACGGTGCGAACGGGTCTGAAGAGGGAGTTCGCCTTTGCCATGAAGGCCCAGTCTGAGATCTGTGCCTCCCTCGGTCGAACCCGGTCCAACAAGAACCGGAATGAGGTTCACGCTCCGGCTAGCAAAAGGTCCAGGAAGTCCGGTTCAGTGAAGAAAAATAAGAATGAGGAAACGAAGGAGGAGGACGTGTGTGATGCTCTGAGCGAGGAGGAGGAGGCAAAAAGTGACGTGGTGGACCTTGAAGAACCCAAGAATCAGGTGGGAGAAGAAACTGTGAGCGAGAATGAACCCAAAACTGAGAATGAGCATGTATTGAATTGTTCAAAGGAAGAGGTGATGGATGAAATGGAGCAACCCGTTTGCGAAAATGGGGTCAAAGAGGGAGAGACATGTGCTAAGGAAGAAGGTACTATTCCAATTTTGTGTGGGGATGATTGCAAGGTGAAGGTGGTTTCTACAGAGAAGGCGCCAAGGAGGTTTACGAGGTCAACGCTGAGGAAAAAATTGGATGATGAAGGGAATGCTAGTGCCATAGATTTTGACATTGGTGATGATGGTAAGAAGGAAAATGAGGCTGGCACGGTAATCACCACTACCCCAATTCAAGTAAAAAAGTCCAAGACTGGTTCTAATTGGAAGAAGTTCCCTTCGAAGCTGAAGGACCTTCTATCCTCTCGGATTCTTGAGGGAGTACCCGTGAGTTATATCCGCAGTCTGAAGGCGCGAAAGCCTGGGGAAGCAGGGCTCCGGGGAGAGATTAGAGGCGATGGGATTGTGTGCTATTGTGAAAGTTGTAATGGGGTTGAGGTTGTGACACCCACTGTGTTTGAGCTGCATGCTGATAGTTCAAACAAACGCCCCCCAGAGTATATTTACCTTGAGAATGGAATTACCCTCCGTGATATCATGAATACATGTTTGAACATTCCATTAGACTCTTTGGAGGAAGCTGTCCAAAAGGTCCTTGGAGGCTTTACTATGAAGAAATCTAGCTTCTGTGTGAACTGCAGAGATGTCAATGTTGTATCAACACTATTATGCAACTCATGCATGGGACTGTCAAAGGACTGTCAACCTAGTCCCACTCAAACAACTGAGACTAGCAGTAGCTGTGTTTCACTAGCAGTTCAATCGAGATCCCCAGAACCAGATGTGCTTCCAAAGTCATTGAACAATGGAATGAAACACAGTACATCTCGTGGTAAGAGTCAAGGAAGACTAACTAGGAAGGATCTAGGATTGCATAAGTTGGTCTTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGAAAGCAACTATTGGTAGGTTACAAAAGGGGCTTTGGAATTGTTTGTGGCTGCTGTGAGAATGAGGTCAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTAATGGAGTTTCACTCCATGAGTTGTCCATCTCTTTATCTAAAGATCGAAGGATTTCTACCCGTGATAATGATGATCTCTGCAGTATATGTCGAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGTATACCAAGTGATACCTGGTATTGTAAATATTGTCAGAATGTATTCCAGAAAGACAGATATGTAGCGCATAATGCGAATGCTCTAGCAGCTGGAAGGGTTGCAGGCGTTGATCCTATGGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAACTCAGGAGGTTGACCATGGTGGATGTGCACTGTGCAGAGACCAAGATTTCAGCATAAGTTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAGAGAATATCATGTAGGGTGTTTGAAGGATCATAACATGCAGATCCTAGAGGTATTACCTGAAGGGAATTGGTTCTGCTGCTCTGATTGTGATCAAATTCATACTGATATGCTAAATTTGGTGGCTCGTGGGGAAGAGAATCTTCCAGATTCCCTCTTGAGTTTGATTAAAAAGAAGCATGAGGAAAAAGGCTTAGAATCTGAGGCTGGTCTTGATATAAAATGGAGGATTCTGAACTGGAATTTGGATGCTTCTGATAAGAATAGGTCATTGCTTTCAAAGGCTGTTGCTATCTTCCATGAGCGGTTTAATCCTATAGTTGATTCTGCTTCAGGCCTTGATTTCATTCCAGCAATGCTTTATGGAAGGAAGATCAACAGTCAATATTTTGGCGGAATGTACTGTGCGGTGCTCACTGTCAACCAGGTGGTTGTTTGTGCTGGGGCATTTCGTGTTTTTGGGCAAGAAGTGGCAGAGCTTCCATTAGTGGCAACTACAACTGATTCCCAAGGACAGGGTTACTTCCAGTCCCTGTTTTCTTGCATTGAGAGGGTGCTTGGATCTTTAAAAGTGAGACACTTTGTCCTACCAGCTGCTGTTGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAGCTCGACAAAGATGAGATAAACAATTACAAGAGATATTATCGCATGATGATATTTCAAGGGACCTCGATGCTACAGAAGCCAGTTCCTGCACTCTAA 2643 0.4457 MANGTDSEQFVVLSTVRTGLKREFAFAMKAQSEICASLGRTRSNKNRNEVHAPASKRSRKSGSVKKNKNEETKEEDVCDALSEEEEAKSDVVDLEEPKNQVGEETVSENEPKTENEHVLNCSKEEVMDEMEQPVCENGVKEGETCAKEEGTIPILCGDDCKVKVVSTEKAPRRFTRSTLRKKLDDEGNASAIDFDIGDDGKKENEAGTVITTTPIQVKKSKTGSNWKKFPSKLKDLLSSRILEGVPVSYIRSLKARKPGEAGLRGEIRGDGIVCYCESCNGVEVVTPTVFELHADSSNKRPPEYIYLENGITLRDIMNTCLNIPLDSLEEAVQKVLGGFTMKKSSFCVNCRDVNVVSTLLCNSCMGLSKDCQPSPTQTTETSSSCVSLAVQSRSPEPDVLPKSLNNGMKHSTSRGKSQGRLTRKDLGLHKLVFEEDVLPDGTEVAYYARGKQLLVGYKRGFGIVCGCCENEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRISTRDNDDLCSICRDGGDLLCCDGCPRAFHIDCVPLPCIPSDTWYCKYCQNVFQKDRYVAHNANALAAGRVAGVDPMEQINQRCIRIVKTQEVDHGGCALCRDQDFSISFGPRTVIICDQCEREYHVGCLKDHNMQILEVLPEGNWFCCSDCDQIHTDMLNLVARGEENLPDSLLSLIKKKHEEKGLESEAGLDIKWRILNWNLDASDKNRSLLSKAVAIFHERFNPIVDSASGLDFIPAMLYGRKINSQYFGGMYCAVLTVNQVVVCAGAFRVFGQEVAELPLVATTTDSQGQGYFQSLFSCIERVLGSLKVRHFVLPAAVEAESIWTGKFGFTKLDKDEINNYKRYYRMMIFQGTSMLQKPVPAL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi355g00017 880 PANTHER AUTOIMMUNE REGULATOR 51 877 - -
Sebi355g00017 880 Pfam Tify domain binding domain 265 320 IPR032308 -
Sebi355g00017 880 Pfam Tify domain binding domain 456 504 IPR032308 -
Sebi355g00017 880 CDD PHD1_AIRE 522 562 - -
Sebi355g00017 880 SMART PHD_3 610 666 IPR001965 -
Sebi355g00017 880 SMART PHD_3 522 563 IPR001965 -
Sebi355g00017 880 Gene3D - 707 875 - -
Sebi355g00017 880 Pfam PHD-finger 523 564 IPR019787 -
Sebi355g00017 880 MobiDBLite consensus disorder prediction 84 116 - -
Sebi355g00017 880 MobiDBLite consensus disorder prediction 387 420 - -
Sebi355g00017 880 FunFam PHD finger family protein 707 876 - -
Sebi355g00017 880 ProSiteProfiles Zinc finger PHD-type profile. 520 565 IPR019787 -
Sebi355g00017 880 SUPERFAMILY FYVE/PHD zinc finger 509 564 IPR011011 -
Sebi355g00017 880 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 509 586 - -
Sebi355g00017 880 SUPERFAMILY FYVE/PHD zinc finger 602 662 IPR011011 -
Sebi355g00017 880 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 762 862 IPR016181 -
Sebi355g00017 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 668 IPR013083 -
Sebi355g00017 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 579 IPR013083 -
Sebi355g00017 880 MobiDBLite consensus disorder prediction 36 116 - -
Sebi355g00017 880 ProSitePatterns Zinc finger PHD-type signature. 523 562 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi355g00017 Sebi-Chr355 259550 264748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi355g00017 195 877 PHD Transcription Factor Family AT2G36720 43.351 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi355g00017 TDBD 8.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi355g00017 - - aprc:113859749 1230.31