Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi355g00007 ATGCCAAAGGTCACAACTGCCTTCTCAAATTGCTCTCAAGGGCTGCAGATGTTTCCTGTGACTGAATATATGGTTTCACCCTCTCTTGAAGTCAACTCTGCCTCTGGTTCACATTCTAGTTCCCTCCTCTTCTATCTCTCTGATCTCAAAGACAAGCTTAGTCAGCTTCAGAATCTGGTTGCTGTTCTGGTCTCCCCTGAACCTGAGTCAACAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAACTCATAGTTGCAGCTAGTTCAATGAGATTCACCTGCCAACAAATCGCTCAAGGGGATGATGAAACGGATATAATAGAATTGGATGCTTCTGATTTGTTGGCAAGGTATACACATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAAACAAATGCAGCCTTGAGCAACCCAATGAAAAACAGAGGGAGGTTAATATTGGGTGAGGGAAGTGGGTGTTTGAAGGCCAAGAAATATTCATGCCCTTATGAAGGGTGTAGGTGGAACCAAAAGCATGCAAAGTTTCAGCCTTTGAAGTCAATGGTTTGTGTGAAAAACCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCATGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGTCACGTTGCTTTGTTCGTGGGACACACTCCAGCCAATAGCAGTGCTTCAGGATCAGCAAATTCAGAACAACACGCATTGCACTTGCAGCAGCAGATCGGTGTTGGAAGTTCATGA 897 0.4526 MPKVTTAFSNCSQGLQMFPVTEYMVSPSLEVNSASGSHSSSLLFYLSDLKDKLSQLQNLVAVLVSPEPESTTSMAISSMNSTIQELIVAASSMRFTCQQIAQGDDETDIIELDASDLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPMKNRGRLILGEGSGCLKAKKYSCPYEGCRWNQKHAKFQPLKSMVCVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPANSSASGSANSEQHALHLQQQIGVGSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi355g00007 298 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 104 279 IPR044300 GO:0010044|GO:0010447
Sebi355g00007 298 MobiDBLite consensus disorder prediction 275 298 - -
Sebi355g00007 298 SUPERFAMILY beta-beta-alpha zinc fingers 122 148 IPR036236 -
Sebi355g00007 298 Gene3D Classic Zinc Finger 121 199 - -
Sebi355g00007 298 Pfam C2H2-type zinc finger 123 145 - -
Sebi355g00007 298 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Sebi355g00007 298 Gene3D Classic Zinc Finger 215 265 - -
Sebi355g00007 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Sebi355g00007 298 SMART c2h2final6 123 145 IPR013087 -
Sebi355g00007 298 SMART c2h2final6 179 212 IPR013087 -
Sebi355g00007 298 SMART c2h2final6 217 239 IPR013087 -
Sebi355g00007 298 FunFam Zinc finger protein 574 122 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi355g00007 Sebi-Chr355 201798 202994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi355g00007 108 276 C2H2 Transcription Factor Family AT5G22890 71.006 9.32e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi355g00007 zf-C2H2_6 0.0004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi355g00007 - - var:108332918 355.525