Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00048 ATGCAGCTGAAAACTCAGTTTTTCTTCTTCTTCTGTTGCATCTGCTATTTCTCTTATGGTTTTGCTGCTGCAGGGAGTGATGAAGTATCTGCTTTACTTTCTATAAAAGCAGTTCTCATTGATCCCTTGAATAGCCTACATGATTGGAAATTGTTGGACAAAGGGAAGGATGCATGTAACTGGACTGGTGTACAGTGCAACTCAGATGGAGCTGTAGAGAAGCTTGATCTTTCCCACATGAATCTGAGTGGCAGTGTCTCCAATGAGATACAAAGGCTAACAAGTCTCACTACTCTCAACTTGTGCTGCAATGAATTCTCATCATCACTGTCAAACTCCATAGCCAATCTCACCTCACTGAAGAGCCTTGATGTAAGCCAGAATTTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAAGGCATCAGGACTTATAACCTTAAATGCATCCAGCAACAATTTCTCAGGTTTTCTTCCTGAGGACCTTGGAAATGTCTCTTCCTTAGAGAGTCTGGATCTCAGAGGCAGTTTCTTTGAAGGGTCAATTCCAAAATCCTTCAGTAACTTGAGTAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACTGGGGAGATCCCAGGTGAGCTGGGACAACTTTCATCACTGGAGTATATGATCATTGGGTACAATGAATTTGAAGGTGGGATTCCAGCAGAGTTTGGTAATCTCACCAAGCTGAAGTATCTTGATGTAGCAGAAGGCAATCTTGGTGGTCAAATTCCAGCTGAGTTGGGAAAGCTTACATTATTGAGTACAGTTTTCTTATACAGGAACAATTTTGAAGGCAAGATTCCACCATCAATTGGCAACATGACTTCATTAGTGCAGCTAGATCTCTCAGATAACATGTTATCAGGAAATATTCCAGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGAAACCAGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGAATTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTGACCTTGGCAAGAATTCACCACTTCAGTGGTTGGATGTATCATCCAATTCACTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAGGGCAATCTCACCAAGCTTATACTTTTCAATAATGCTTTCTTGGGTCCAATTCCAGCAAGTCTATCAACATGTCCTTCACTTGTTCGTGTTCGAATTCAAAACAATTTCCTTTCTGGGACAATTCCTGTGGGTTTTGGTAAGCTTATGAAGCTTCAGAGGTTAGAATTGGCTAACAATAGTCTCACTGGTGCAATTCCTAATGATATTGCTTCTTCCACATCCCTTTCTTTCATAGATTTCTCCAGAAACAACCTCCACTCTTCTCTTCCTTCAATCATTATTTCCATTCCAAATCTGCAAACTTTCATTGTCTCCAACAACAAGTTGGAAGGTGAAATTCCAGGCCAATTCCAGGACTGTCCCTCACTTGGGGTCCTTGATCTCTCATCAAATTGTTTCTCTGGAAGTGTTCCAGCAAGCATTGCTTCATGTCAGAAATTGGTAAAACTAAACCTACAGAACAACCAATTGACTGGGGGTATCCCAAAAGCAATAGCAAGCATGCCTACTCTGGCCATTCTTGATCTTGCTAACAACTCTCTGACTGGTCAAATACCTGAAAGCTTTGGTATGTCCCCAGCTCTGGAAACATTCAATGTCTCATACAACAAGCTAGAAGGTCCTGTCCCAGCAAATGGTGTGCTAAGAACAATAAACCCAAATGATCTTGTGGGCAATGCTGGCTTGTGTGGTAGTGTCCTCCCTCCTTGTGGCCACAACCCTGCATATTCATTAAGGCATGGGAGCTCACATGCAAAGCACATTATTGTAGGATGGATAATTGGAATATCATCAATCATAGCCATTGGGATTGCAACTTTTGTAGCAAGATCTATATACATAAGGTGGTACACTGAAGGATTGTGCTTCCGAGGAAGATTTTATAAAGGTAGCAAGGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTGATTTTACAAGTTCTGACATTTTATCTTGCATCAAGGAAACAAATGTGATTGGCATGGGTGCAACTGGGATTGTTTATAAGGCTGAGATACCACAGTCAAGTACAGTTGTGGCAGTCAAAAAGTTGTGGAGATCAGGATCTGATATTGAAGTAGGCAGTAGTGATGATCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTACTAGGCTTTCTTTATAATGACACTGATGTGATGATAGTTTATGAATTTATGCTCAATGGAAACCTAGGAGATGCCTTGCATGGTAAACAAGCAGGTAGATTGCTTGTAGACTGGGTTTCCAGGTATAACATAGCTCTAGGAATTGCACAAGGACTTGCTTATCTTCATCATGACTGTCATCCACCTGTTATCCATCGAGACATCAAGTCAAATAATATACTTCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTCGGGTTGGCCAAGATGATGCTCCGGAAGAATGAAACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAGGTGGATGAAAAGATTGACATTTACAGTTATGGAGTAGTTCTGTTGGAGCTTCTCACAGGAAAGCGGCCTTTAGATCCAGAGTTTGGAGAATCTATAGACATTGTAGGTTGGATTAGAATGAAGATAGACAAAAAATCTCCAGAAGAAGCATTAGACCCCAGTGTAGGAAACTGCAAGCATGTTCAAGAAGAGATGCTTTTAGTTCTCAGAATAGCACTTCTTTGCACTGCCAAGCTCCCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTAGGGGAGGCAAAGCCTAGGAGAAAGAGTGGTAGGAGCAATGAAACATTTGCAGCTAACAAGGAAATGCCAGTTATTAGTACATCACCAGTTAATGGCCTTCTCTAG 3039 0.4192 MQLKTQFFFFFCCICYFSYGFAAAGSDEVSALLSIKAVLIDPLNSLHDWKLLDKGKDACNWTGVQCNSDGAVEKLDLSHMNLSGSVSNEIQRLTSLTTLNLCCNEFSSSLSNSIANLTSLKSLDVSQNFFIGDFPLGLGKASGLITLNASSNNFSGFLPEDLGNVSSLESLDLRGSFFEGSIPKSFSNLSKLKFLGLSGNNLTGEIPGELGQLSSLEYMIIGYNEFEGGIPAEFGNLTKLKYLDVAEGNLGGQIPAELGKLTLLSTVFLYRNNFEGKIPPSIGNMTSLVQLDLSDNMLSGNIPAEISQLKNLQLLNFMRNQLSGPVPSGLGNLPQLEVLELWNNSLSGPLPSDLGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFLGPIPASLSTCPSLVRVRIQNNFLSGTIPVGFGKLMKLQRLELANNSLTGAIPNDIASSTSLSFIDFSRNNLHSSLPSIIISIPNLQTFIVSNNKLEGEIPGQFQDCPSLGVLDLSSNCFSGSVPASIASCQKLVKLNLQNNQLTGGIPKAIASMPTLAILDLANNSLTGQIPESFGMSPALETFNVSYNKLEGPVPANGVLRTINPNDLVGNAGLCGSVLPPCGHNPAYSLRHGSSHAKHIIVGWIIGISSIIAIGIATFVARSIYIRWYTEGLCFRGRFYKGSKGWPWRLMAFQRLDFTSSDILSCIKETNVIGMGATGIVYKAEIPQSSTVVAVKKLWRSGSDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDVMIVYEFMLNGNLGDALHGKQAGRLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMLRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLDPEFGESIDIVGWIRMKIDKKSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKSGRSNETFAANKEMPVISTSPVNGLL 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00048 1012 FunFam MDIS1-interacting receptor like kinase 1 788 997 - -
Sebi354g00048 1012 SMART serkin_6 703 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00048 1012 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 177 277 - -
Sebi354g00048 1012 Pfam Leucine rich repeat 478 538 IPR001611 GO:0005515
Sebi354g00048 1012 Pfam Leucine rich repeat 167 225 IPR001611 GO:0005515
Sebi354g00048 1012 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Sebi354g00048 1012 Gene3D Transferase(Phosphotransferase) domain 1 788 1002 - -
Sebi354g00048 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Sebi354g00048 1012 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Sebi354g00048 1012 ProSitePatterns Protein kinases ATP-binding region signature. 709 733 IPR017441 GO:0005524
Sebi354g00048 1012 Gene3D Phosphorylase Kinase; domain 1 703 787 - -
Sebi354g00048 1012 ProSiteProfiles Protein kinase domain profile. 703 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00048 1012 SUPERFAMILY L domain-like 56 304 - -
Sebi354g00048 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 636 994 - -
Sebi354g00048 1012 FunFam MDIS1-interacting receptor like kinase 1 703 787 - -
Sebi354g00048 1012 SUPERFAMILY Protein kinase-like (PK-like) 697 978 IPR011009 -
Sebi354g00048 1012 Gene3D Ribonuclease Inhibitor 276 378 IPR032675 -
Sebi354g00048 1012 Gene3D Ribonuclease Inhibitor 175 275 IPR032675 -
Sebi354g00048 1012 SMART LRR_typ_2 549 572 IPR003591 -
Sebi354g00048 1012 SMART LRR_typ_2 333 357 IPR003591 -
Sebi354g00048 1012 SMART LRR_typ_2 93 116 IPR003591 -
Sebi354g00048 1012 SMART LRR_typ_2 285 309 IPR003591 -
Sebi354g00048 1012 SMART LRR_typ_2 429 453 IPR003591 -
Sebi354g00048 1012 SMART LRR_typ_2 189 213 IPR003591 -
Sebi354g00048 1012 Gene3D Ribonuclease Inhibitor 25 174 IPR032675 -
Sebi354g00048 1012 Gene3D Ribonuclease Inhibitor 379 619 IPR032675 -
Sebi354g00048 1012 SUPERFAMILY RNI-like 254 591 - -
Sebi354g00048 1012 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 25 176 - -
Sebi354g00048 1012 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 362 622 - -
Sebi354g00048 1012 Pfam Protein kinase domain 705 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00048 1012 FunFam Leucine-rich repeat receptor protein kinase EMS1 278 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00048 Sebi-Chr354 958501 961756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00048 6 1012 Receptor kinase-like Gene Family AT1G08590 60.621 0.0 1178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi354g00048 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00048 - - gmx:100788430 1746.1