Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00047 ATGTCAACGGTGTCTAAAGATGATAACTTGGCCCTCTCTTCTGAGGATTCTTCGTCCCCAGATGACTCTGATCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACACTGCTCCTCATGCAAAGTCTCACCACCATGCTCCTTATGCTAGAATATTCACCGCTAAGGATTTTCCTTCTTCAGCACCTTCACCTTCCAACGCCACTGCTGGGACCAAAAGGGCTGCTGATTCTCTTGTCGCTAGTAACCGTCCCAGTCAAGTGGTTGGATGGCCTCCCCTTCGAACATATAGAATGAATAGCTTTAATAGCCATGCAAAATCATCTGAAGCATTCAACTCTATGGATGAGAAGAGTAAGAGCAATAATACTGTTGCAAGGAAGAGTACTGACAATGGCAATGATAATAACAACCCTGATATCAAAGAGAAAAGACAGCTCAGGAGTTCCCCGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAACGAATCAACTACAGCTATCTCATGCAAAGGATCAAATGGGGAGGATCATGGCATAATTATAGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTGGTTGGAGATGTTCCTTGGGGCGCCAGGATTGGAAGAAAAGAACAGCAGACAGAAAAGCAAGCCCATATAGATATTGTTTTCATGGCTAAGGATAAGGAGAACTTATCTTATATGCAGCAGAAATAG 825 0.4279 MSTVSKDDNLALSSEDSSSPDDSDLELGLGLSLSHTAPHAKSHHHAPYARIFTAKDFPSSAPSPSNATAGTKRAADSLVASNRPSQVVGWPPLRTYRMNSFNSHAKSSEAFNSMDEKSKSNNTVARKSTDNGNDNNNPDIKEKRQLRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTAISCKGSNGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGARIGRKEQQTEKQAHIDIVFMAKDKENLSYMQQK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00047 274 ProSiteProfiles PB1 domain profile. 149 259 IPR000270 GO:0005515
Sebi354g00047 274 Pfam AUX/IAA family 30 240 IPR033389 -
Sebi354g00047 274 MobiDBLite consensus disorder prediction 55 91 - -
Sebi354g00047 274 MobiDBLite consensus disorder prediction 108 135 - -
Sebi354g00047 274 MobiDBLite consensus disorder prediction 1 18 - -
Sebi354g00047 274 SUPERFAMILY CAD & PB1 domains 146 247 - -
Sebi354g00047 274 Gene3D - 144 263 - -
Sebi354g00047 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 248 IPR003311 GO:0005634|GO:0006355
Sebi354g00047 274 MobiDBLite consensus disorder prediction 1 28 - -
Sebi354g00047 274 MobiDBLite consensus disorder prediction 58 72 - -
Sebi354g00047 274 MobiDBLite consensus disorder prediction 108 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00047 Sebi-Chr354 953102 957504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00047 137 244 B3 DNA Binding Superfamily AT1G59750 34.259 1.31e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi354g00047 AUX_IAA 6.3e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00047 K14484 - gmx:100527033 344.739