LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi354g00041	ATGGCACCCAATCCAAAAGTGGCACAAGCCTATCGCGCAATGGCAAATCTTGGGATTTCTGAATCACAAGTGAAACCAGTATTAAAAAAACTCCTCAAATTGTATGATAAAAATTGGGAACTCATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGATGAATATAAGGTGCCAGAACAGAAAAAGAAAAGCAAAAAAGTTAATGCTATAGCTGCTAAAATGTCTTCTGTCTTTTCAAACAATCAGGAAGAAGAGATGGACGGTGAAGAAGCTCAGATGCATGTTGAACCCGCCCGTCCTTTGAAAAGATGCCTCTCCTTTAAAAAACTTAGATCAGAAGACAACACATCCGCGGAGGGCTGTTCTAGAAAGCAGCCTCAAAGTCAAAACAAAGCTGTGTCATCTGATGGAAATGGGAGGATTGAAGCACGCCCAGTTCCATCACGAGATGGTATTGCTGACAAAGGAAAGCAACCTGCATCACCCCAAGTTTCTCTTAGAGGGAGAAGACTTCTATCAGAAAGAGCATCCCCATCAATACCATCTAAAGAACCAACAGTTGGACCAGGAAAGTTTCCATTGCCAAATGACCAAATGCCTTGTACTCATGCCTTGATCATACCCAAGGATGAGCCTATTGATGAATTGCCTGATTATGAGGTTCCCATTGCAGTGATTCCTCCTGAACCATCAAGTTTAAGGAACTCATCAATGAATAATGGCATAACTGGAAAGCAAGAAGGCCATGTCACTGTGGCATCATCGCAACGCAGAGATGAAGATATTCTTCATTCGTCAAATGAAGAAGAAGCAATGTCTAATGTAGTGATTGCCACGTCAACTTCGGGAGAAGTAAAACTTTCTCTTAGCTGTAACTCAAGTCTTTTGGGGCCAGATTTTCATATGCCTAGTCGAGAGAAACTTATAAAAATGATGGTGGATAAATGTCTCCGATCATATAAAATCACCGACCCAAGTTTTTCTGTCCCTAAGCTTTTGAGGCAAATATGTGACTGCATGTTAGAATTCAGAACTGATTCAAATGATGACTCACAAGAAGGTTCTAGGACAAAATCAAGTGTTGATTTATTGAAGGAATCAGAGGCACATGACACACTGAGTGCTGGGGGAAGTAAAGATCTGCACATGCTTCCTCACTCATCAAATGGACCAATCAATGTTATTAAGTCTTCTCCTACCTTGGTTTCACCCCGCAGTCCCTTTTCTCTAGCCCACCAGACTGGTCAGGATGATGCTGTGTTGGTTTCCAAGATGAACAGGACAAATGATTTTTCACGAAGTGATGTCAGAAAAGAGCCCGAGGATCCCATGTCTCCAAATTCCCATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATATAAGGTCTTTTCATGATGCTGATGACCTTACAAAAGGAGAAGAAAATGTTAAAATTTCCTGGGTGAATGAATCTACTCATGATTTTCCACCATATTTTAACTACATACCCCAAAATCTTGTGTTCCAAAATGCTTATGTTAACGTTTCTCTATCCCGTATTGGGGGTGAGGACTGTTGTTCACCCTGTATGGGCAATTGCGTCTTGCTGTCTACACCCTGCACTTGTGCAAATAAAACGGGGGGTGAATTTGCATACACTGCACAAGGCCTAGTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCAGTCGCCACCCTCAACAACATTACTTCTATTGCAAAGATTGCCCACTTGAAAGATCTAAGAATGATGTTTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAAGAATGTGGCAATCGGGTTACTCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGTACATTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACCAAAGAGTTGCATGAGAGGAACATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTAGACGCAGATTGGGATTCAGGATTTGTTAAGGATGAAGAAGCTCTATGCTTGGATGCAGCATCCTTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATGCTAACTTGGTTGAGATCCCAGTTGAAGTTGAGGGCCCAGATCACTACTACTATCATTTGGCTTTTTTCACTTCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGTATTGACTTTGATGACCATGATCATCCTGTCAAGCTATTCCAGTGCAGATGTGGTAGTAAATTCTGCAGGAATATGAAGCGAACGAATAGATCCGGTAGATCTGCATCAATTGCAAGATGA	2415	0.4137	MAPNPKVAQAYRAMANLGISESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDEYKVPEQKKKSKKVNAIAAKMSSVFSNNQEEEMDGEEAQMHVEPARPLKRCLSFKKLRSEDNTSAEGCSRKQPQSQNKAVSSDGNGRIEARPVPSRDGIADKGKQPASPQVSLRGRRLLSERASPSIPSKEPTVGPGKFPLPNDQMPCTHALIIPKDEPIDELPDYEVPIAVIPPEPSSLRNSSMNNGITGKQEGHVTVASSQRRDEDILHSSNEEEAMSNVVIATSTSGEVKLSLSCNSSLLGPDFHMPSREKLIKMMVDKCLRSYKITDPSFSVPKLLRQICDCMLEFRTDSNDDSQEGSRTKSSVDLLKESEAHDTLSAGGSKDLHMLPHSSNGPINVIKSSPTLVSPRSPFSLAHQTGQDDAVLVSKMNRTNDFSRSDVRKEPEDPMSPNSHSLVVVPQHQLTADDIRSFHDADDLTKGEENVKISWVNESTHDFPPYFNYIPQNLVFQNAYVNVSLSRIGGEDCCSPCMGNCVLLSTPCTCANKTGGEFAYTAQGLVKEEFLEECIAISRHPQQHYFYCKDCPLERSKNDVCLEPCKGHLKRKFIKECWSKCGCGKECGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTTKELHERNMKCTENGKYTYPVLLDADWDSGFVKDEEALCLDAASFGNTARFINHRCFDANLVEIPVEVEGPDHYYYHLAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRTNRSGRSASIAR	804

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi354g00041	804	Gene3D	SET domain	461	774	IPR046341	-
	Sebi354g00041	804	MobiDBLite	consensus disorder prediction	119	195	-	-
	Sebi354g00041	804	Pfam	SET domain	644	765	IPR001214	GO:0005515
	Sebi354g00041	804	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	799	-	-
	Sebi354g00041	804	ProSiteProfiles	Pre-SET domain profile.	523	629	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Sebi354g00041	804	FunFam	SET-domain containing protein lysine methyltransferase family protein	478	790	-	-
	Sebi354g00041	804	Pfam	Ubiquitin-binding WIYLD domain	6	59	IPR018848	-
	Sebi354g00041	804	SUPERFAMILY	SET domain	484	788	IPR046341	-
	Sebi354g00041	804	MobiDBLite	consensus disorder prediction	350	370	-	-
	Sebi354g00041	804	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	804	IPR025776	-
	Sebi354g00041	804	ProSiteProfiles	SET domain profile.	632	765	IPR001214	GO:0005515
	Sebi354g00041	804	Pfam	Pre-SET motif	479	624	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Sebi354g00041	804	SMART	set_7	632	771	IPR001214	GO:0005515
	Sebi354g00041	804	CDD	SET_SETDB-like	499	765	-	-
	Sebi354g00041	804	SMART	preset_2	475	616	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Sebi354g00041	804	Gene3D	-	1	59	IPR043017	-
	Sebi354g00041	804	MobiDBLite	consensus disorder prediction	124	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi354g00041	Sebi-Chr354	803828	863198	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi354g00041	608	790	C2H2 Transcription Factor Family	AT2G23740	40.212	2.73e-29	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Sebi354g00041		Pre-SET	8.4e-18	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi354g00041	-		-	gmx:100778335	1170.22