Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00034 ATGAAGTGTCTACGCTCAGGGGAGCCTTTGGGAGGAGTAGATGAAGTGTTTCCTTCATCTGAATCTCTTGTAATCAAGGACCTTTCCGCAAGTGGACATTCTTGCCTAGCCGGACAAGTTGATAAGAAGCCGGATACTGGCAATATAGAAGAAGCTGAATCATCTCTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGATATGAATATCAGAAAGGAAACATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAGAGAACGCCATAAGAAATATTCTCATAATCATGCCGAACCCCAAATATCTATACATGCTGTTGGTTTACTGTTGGAATCAGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGCCAAAAGAGGATGCAGTTGCATTGTCAGTCATCTGCTATGCAAAAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCATTGCCCGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTCCATCAATGGAATCTTGATGCAGAGACTATAGCAAGGATCCAGAAAGAGTTTGTTGTTTTTCTTCTATATAATGGAGGGGAAGCAACACCCCCTGATCTCCGTTCCCAAATGGATGGCTCATTTGTACCAAGAAACAACACAGAAGAGGCTATACTTCTTTTGATGATTTTGCTAAGAAAAGTCACTCTTAATAGAATTGAGTGGGATCCTTCAATTCTAGACCACCTTTCATTTGCCCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTCCCTGGGACCATCCATCGAAGAGATAGGTACCATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGAATCTTCTAAAAAAATTGTTGAGAAATAGAGAGGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTAGTCTAGCAGGAGAAGGGGCAAGCTTTGCTCAGAGAGCACTTAAGAGCTTGGATGGAAGATGTAATCAGTTAGAAAATCTCGCCAATTTCTTTCTAGGTGTTTCATTTTCAACAAACTCAAAATTGGCCATTTCTGATTCTGAGAGGTCTAAGAGACAATCTGAGGCACTGCATTCCCTGGAAACTGCTGGCAGAATGACCAAGATGAGAGAGCCCCTTGTACTATACCATCTTAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTGCTCTCTAAAACTGGAAGGTGGTTCTAACGTAAAAGGGTGGTTATTGGTAGCCCGGATATTATCTGCTCAAAAACGGTTTTTGGATGCCGAATCTATTATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGTTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCGCAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAACTTCTGGCTGTTCTTCAAATTCAGAGTAAAGGTTATGGTTCTTGGAAGAAGCTATATAAGGATAATAGAGATTGTGCTAGGAACTTTGAAGTGGAAATATGGCATGATCTTGCTTATGTGTACATCAGTCTTTTGCAGTGGCATGATGCAGAGGTGTGTCTTCTAAAATCGAAGGCCATTAAACCATACTCTGCTTCTAGATGTCATGCACTAGGTACAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTCCGTGATGCTTTGGACATTGACCCTAGCCATGTACTGAGCTTAATCTCCACTGCTTAG 1962 0.4174 MKCLRSGEPLGGVDEVFPSSESLVIKDLSASGHSCLAGQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRNRERHKKYSHNHAEPQISIHAVGLLLESVFLKAKSLQVLGSQKRMQLHCQSSAMQKAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAETIARIQKEFVVFLLYNGGEATPPDLRSQMDGSFVPRNNTEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRRDRYHALALCYYGAGKDLVALNLLKKLLRNREDPKHVPGLLMASKICCENSSLAGEGASFAQRALKSLDGRCNQLENLANFFLGVSFSTNSKLAISDSERSKRQSEALHSLETAGRMTKMREPLVLYHLSLEYAEQRKLDAALYYAKCSLKLEGGSNVKGWLLVARILSAQKRFLDAESIINAALDQTGKWDQVDLLRTKAKLQIAQGQLRSAIETYTQLLAVLQIQSKGYGSWKKLYKDNRDCARNFEVEIWHDLAYVYISLLQWHDAEVCLLKSKAIKPYSASRCHALGTMYEAKGLYKEALKAFRDALDIDPSHVLSLISTA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00034 653 SMART tpr_5 522 555 IPR019734 GO:0005515
Sebi354g00034 653 SMART tpr_5 451 484 IPR019734 GO:0005515
Sebi354g00034 653 SMART tpr_5 486 519 IPR019734 GO:0005515
Sebi354g00034 653 SMART tpr_5 578 611 IPR019734 GO:0005515
Sebi354g00034 653 SMART tpr_5 612 645 IPR019734 GO:0005515
Sebi354g00034 653 SUPERFAMILY TPR-like 332 548 IPR011990 GO:0005515
Sebi354g00034 653 SUPERFAMILY TPR-like 520 648 IPR011990 GO:0005515
Sebi354g00034 653 Gene3D Tetratricopeptide repeat domain 269 514 IPR011990 GO:0005515
Sebi354g00034 653 Gene3D Tetratricopeptide repeat domain 515 650 IPR011990 GO:0005515
Sebi354g00034 653 Pfam Tetratricopeptide repeat 613 645 IPR019734 GO:0005515
Sebi354g00034 653 ProSiteProfiles TPR repeat profile. 612 645 IPR019734 GO:0005515
Sebi354g00034 653 Coils Coil 386 406 - -
Sebi354g00034 653 PANTHER PROTEIN NPG1 1 653 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00034 Sebi-Chr354 659221 663192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00034 1 653 Calmodulin-binding Proteins AT4G28600 56.777 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00034 K21843 - gmx:100800762 1066.6