Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00025 ATGGATCATGTGATTGGTGGGAAGTTTAAATTGGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTCTATCTAGGTGTTAATGTACAAAGTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGCGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGCCTAGAAGATTTATTCAATTACTGTAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTGCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGTAAAGCAAATCAAGTGTACATTATTGATTATGGCCTTGCAAAAAAATACAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACGAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCCTCTGAGTTTGTATCTTACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGAATGCGGGTCCAACTCTACAAAAACCAGAAAAGATCTCAGCTGGGAAAGACATTCGAGAGAAATACTCTGGTACTGTTGAAGCATTCTCCCGGAGGAACCACGGAAGCTCTAGTCCTCACCATGGCGATCACACCAAACATAGGACTTTTGAGGATGTACCTGTGCACAAGGATTTGCACTATGCCCAACACAGTTCCACTAGATATGGCAGCAGCTCAAGAAAAGCCATAATCTCATCAAACAAGCCAATTTCTTCAGGTGACCACACTGGCAGGCTAACCTCAAGTGGGGGCCGTCCATCTGCTACACACAGAATTCAACCTGTGTATGACACCAAACAAGCAACTTATACACGCAATGGTTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAGCTTTGAGCTTCTCTCTATCAGGAAGTAA 1365 0.4344 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHGTGKAAMNAGPTLQKPEKISAGKDIREKYSGTVEAFSRRNHGSSSPHHGDHTKHRTFEDVPVHKDLHYAQHSSTRYGSSSRKAIISSNKPISSGDHTGRLTSSGGRPSATHRIQPVYDTKQATYTRNGSMRGNRDDPLRSFELLSIRK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00025 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi354g00025 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Sebi354g00025 454 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Sebi354g00025 454 PANTHER CASEIN KINASE-RELATED 9 350 - -
Sebi354g00025 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi354g00025 454 MobiDBLite consensus disorder prediction 377 436 - -
Sebi354g00025 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00025 454 FunFam Casein kinase 1-like protein 1 330 - -
Sebi354g00025 454 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Sebi354g00025 454 MobiDBLite consensus disorder prediction 376 442 - -
Sebi354g00025 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00025 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi354g00025 454 FunFam Putative Casein kinase I 1 85 - -
Sebi354g00025 454 MobiDBLite consensus disorder prediction 300 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00025 Sebi-Chr354 503941 510072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00025 8 213 MAP Kinase Kinase Kinase AT3G06030 26.389 2.97e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi354g00025 Pkinase 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00025 K08960 - gmx:100789031 851.277