Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00022 ATGGAGGAAGAGCAGGATCGAAATTTGCTCACTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCCACGTTTTGGAAAAGGCTAGGACTAGGAATGATGTTGCTGAAGCTGAAGGGAGCACCAAGGAAGAATGTTCTCATTTACCTGAAACTTTTGATCCATCATCCACTGCCAAAGCGGAACTTCTTCAAAAGCTTAGGGCAGTAGAATTTGAAATAAATGCAGTCTCTTCCACTATTCGAGAATGTAGTGATGGTGGTGAGGACAACTCGGAGCAAGGGATCGCTGAGGGTGATTCCTCCGATGGTTCAAACCTTCAGCGCGTTCTTGCTGCTGATAGGCTGAGAAGCCTGAAGAACACAAAGGCTCAACTAGAGAAAGAGCTTGCGAATTTGTCTAAGGATAATGCTTCTGAAAGGGCTGACCATGAAAAACTGATCTTTAGCTTAGTTAGGGAAGACCGAAAGCCCCCCAAGAGGAAGCTTAAAGATCTTAAAAAATTGCACAAAAGCACGGGAAAGCAGGCTAAGACAGTCACTGGAAAACGGCTTAAGACAGTCTCATTTGATGATGATATTGATTTTGATGCTGTTCTGGATGCAGCATCTGCAGGCTTTGTTGAAACGGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCTTTCAACAACCTGACACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATATCGATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCGACCACCAAGCTGCTTGAGTCTAAAGATGTACCCAAACTTGATGCACCCACTTTTCCATTTCGCAGGCTCAAGAAACCACTAAAATTTCCCAAACATCTAAACAGAGAGGTGGAGCTGGATAAAGATTCAAAAAGGAAAAAGAGGCGACCTTTGCCTGATAGAAAATGGACCAAGCGTGTTTCTTGTGAGGATATGCAGCTGGAAGAAAATGAAAATGCAAACGGTTGCTTGGACACTTCCAGTTGTGAAAATTTAGAAGCACAAGATGATGAACATGCTGAGTACGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTTGAACTTTTGCATGATTCTGCTCAGGATTCTTCTCCTAGAAAAAAGCGAGCTAAATCCGATGAATCAGACTATGAAAGCAATAGTTCAAGTGACAATGATTATGGGAAAAGTGCACCATCTAGAAATGGAAGAAAATGGGAATCCCTGATAAATCGCGTCACAAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGGATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAATAACCTTAGTCTGCAAGCAGCTACAAACTATACACCGCATCATAATGACTGGTGCGCCTATTCAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATATCTGTTGGTGGGTATGCAAATGCTTCACCATTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTAAATGCTCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTAGATGGACACAGGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGACCATGCCTTCAGGAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGATTTTTTTGACTAATTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTATAAAACAGAGGATGGCTTTAATAGATGAATTTAATGACTCAAGTGAGGTATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGAACAAATCTTACCGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTGTTGGTCAGAAACGGGATGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTGAATGTGGATGGAGACACACAGTCAACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGACATAAATGTCGTTGGGACACATAAAGATAGTCAGGATGAGCACAAGTATAACCCAACTGCTGAACTGGGCTCTGAAGATGTTGCAGTTGGTAATGATGGCGAATCAGAGAGAGGATCTTTTAGAGGAAAAGGGAAAGAGAAGGTTGGAAATAGTAATGGGGTTGACGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCAATGGGATACATAGTGCTGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGGTAAGACTTGAGGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGGCAGTCCCGAATGCTCCGAAGCCATGATAACATCTCTGTTCCAACATGGACAGGAAGGTCTGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCAGTTGGTAAATAATTGCAAAGCATCTGATGAATTACCAAGCAACAGGTCAAACAAAGTCAATGGATTTGCTGCTGGGGCACCTTCTGGTAAGGCATTATCTTCTGCTGAACTATTAGCTAAAATTCGAGGTAACCAAGAAAAAGCCATCGGGGCTGGGCTTGAGCATCAGTTTGGTATGTCGTCAAGTTCCAATAATCAATCAAGATCTGTAGATGTTAGATCTTCTAGGATTACTGAAAATTCATCAGGATTGCAACCTGAAGTAATGATTCGGAAACTCTGTACCTTTCTCCAACAGCGAGGTGGTAGTTGCAGTTCAGCCAGTATTGTTCAGCATTTCAAGGACAGAATTCCCTCTAAAGATCTTGCGCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCAGAAAGGATCAAATGGATCCCATTGGATTCTGAAACCAGACTATCAAGAATAG 3672 0.4202 MEEEQDRNLLTSLGVKSANPEDIERHVLEKARTRNDVAEAEGSTKEECSHLPETFDPSSTAKAELLQKLRAVEFEINAVSSTIRECSDGGEDNSEQGIAEGDSSDGSNLQRVLAADRLRSLKNTKAQLEKELANLSKDNASERADHEKLIFSLVREDRKPPKRKLKDLKKLHKSTGKQAKTVTGKRLKTVSFDDDIDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPDTSTSHNAAEEENIDDLASSSVERAARSMSEAARARPTTKLLESKDVPKLDAPTFPFRRLKKPLKFPKHLNREVELDKDSKRKKRRPLPDRKWTKRVSCEDMQLEENENANGCLDTSSCENLEAQDDEHAEYESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSSPRKKRAKSDESDYESNSSSDNDYGKSAPSRNGRKWESLINRVTRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGHRNSLSGIDVMRKICNHPDLLERDHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEIFLTNSGHIYRRMDGLTPIKQRMALIDEFNDSSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRVGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGDTQSTETSNIFSQISEDINVVGTHKDSQDEHKYNPTAELGSEDVAVGNDGESERGSFRGKGKEKVGNSNGVDEETNILKSLFDANGIHSAVNHDLIMNAHDEEKVRLEEQASQVAQRAAEALRQSRMLRSHDNISVPTWTGRSGAAGAPSSVRRKFGSTVNPQLVNNCKASDELPSNRSNKVNGFAAGAPSGKALSSAELLAKIRGNQEKAIGAGLEHQFGMSSSSNNQSRSVDVRSSRITENSSGLQPEVMIRKLCTFLQQRGGSCSSASIVQHFKDRIPSKDLALFKNLLKEIATLQKGSNGSHWILKPDYQE 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00022 1223 Coils Coil 1005 1032 - -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 955 977 - -
Sebi354g00022 1223 SMART ultradead3 388 620 IPR014001 -
Sebi354g00022 1223 CDD CSB_WHD 1156 1222 - -
Sebi354g00022 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
Sebi354g00022 1223 Pfam Helicase conserved C-terminal domain 742 849 IPR001650 -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 477 493 - -
Sebi354g00022 1223 FunFam Protein CHROMATIN REMODELING 8 370 652 - -
Sebi354g00022 1223 PANTHER SNF2/RAD54 FAMILY MEMBER 138 1205 - -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 19 52 - -
Sebi354g00022 1223 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Sebi354g00022 1223 CDD DEXHc_ERCC6 392 602 - -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 933 978 - -
Sebi354g00022 1223 SMART helicmild6 766 849 IPR001650 -
Sebi354g00022 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 899 IPR001650 -
Sebi354g00022 1223 Coils Coil 111 145 - -
Sebi354g00022 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 653 IPR027417 -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 1 56 - -
Sebi354g00022 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 916 IPR027417 -
Sebi354g00022 1223 Gene3D - 360 652 IPR038718 -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 84 108 - -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 234 286 - -
Sebi354g00022 1223 FunFam DNA excision repair protein ERCC-6 660 938 - -
Sebi354g00022 1223 CDD SF2_C_SNF 735 860 - -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 477 510 - -
Sebi354g00022 1223 Gene3D - 659 948 IPR027417 -
Sebi354g00022 1223 MobiDBLite consensus disorder prediction 1042 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00022 Sebi-Chr354 471611 478283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00022 692 903 RAD5 or RAD16-like Gene Family AT5G22750 30.233 6.73e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi354g00022 SNF2_N 3.6e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00022 K10841 - gmx:100820025 1981.07