Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00018 ATGGGTCTTAAAGACGTTGGTGCTTCATTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTAGTCCTTCATTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACTTGCACACTTGCGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAACCGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACTGGCTATCGGACCAATCGTGCCACGACATCTGGCTATTGGAAAGCAACAGGGAAAGATCGTACGGTGTTCGATCCAATCACGCGTGAGGTTGTGGGAATGAGAAAAACTTTGGTGTTCTATAGGAATAGAGCTCCCAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCACAAAGGCAAAGCAGACGACAACAGTAATGCCAAACTCATGTTTGAGAGCATAACTCCATCCCTAACTTTGGCTTCATCATCCCCAACCATGCCAGTTGGGTATAACCAACTTCCCCCTTTCTCTTCCTCAATTCATCATCACCCAAACCAAAATAACTCTTTCATGAATCTCCTTCACTTTTCTCATCAAGAAACTAATAACACCAACTGTAGTAGCGTTACTCAAATTAGCCCCAAATGTGACGATGGATATGGCTTCTTATGGGACATGGATCTCGAAGAAAATAGCGCCTTCCAAGATGGTGTGGCCCCAGATTTGGACAGAATGAGATTCGAGATTGATAATAATAATAATAGCATGGTGTTGTTGTAA 837 0.4421 MGLKDVGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADDNSNAKLMFESITPSLTLASSSPTMPVGYNQLPPFSSSIHHHPNQNNSFMNLLHFSHQETNNTNCSSVTQISPKCDDGYGFLWDMDLEENSAFQDGVAPDLDRMRFEIDNNNNSMVLL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00018 278 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 216 - -
Sebi354g00018 278 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Sebi354g00018 278 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Sebi354g00018 278 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Sebi354g00018 278 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00018 Sebi-Chr354 387851 392483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00018 6 237 NAC Transcription Factor Family AT1G56010 44.309 7.78e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi354g00018 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00018 - - gmx:100783645 453.366