Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00015 ATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTTCTTGATGATGTTATGGATTACAAAATTCCTTTAGATGAAAATCTATGTAAAGAGTGTGAAGAATTGGATATATGGATTAATGAAGCTAGAGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGGACATTGTTGATCAAGTTACAGAGCACTTCACTTGATATATGTCACATGATTGTTAGATCCTTACAGTCACCTCCATGTGCATCAGTTTTAGCTAATCTTCAGGAACTTCAGTGTCTCAAGAAGGAAAAGGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATAATATTGAACCATGCAATGAACATCTAAAGGAAATTATTGAGTTGCTTAAGTTGACTTCCAACCAGGAGCTCTTGAAAGAAAGTATTGCCGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAAGGGGACTTGGACGAAATTAATGAAATTGTGAATCTTGTCCGCAATTTACGTGATTATGTGATGAAAACTGAGTGCCCTGTGGTCAAGAGTGGTGTCTCAGTCCCTCCATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCTGGTCAAACTTATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAGACTCGTCAGAGACTTACTCATACAAATCTCACTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGCGTGAGGAAAATAATATCAAACTTTCCAGTAACTCTGAGAACAATAATTCTTCCCGTATCACATCCCCTTCATATTGTTCATTGCCTCAAGATTTTGCTCATGCATGTGGTTTTGGGTCTTTACCTAGTAGCAATTCCACTTCAAGATCATCTCTTCAAACTGGAAATGCATTTGAGAAACAAAAGGGTGATAACTCTTTCAGATTACATGGAGAATGCAATGGATTCCAGAGTGGAGCAACAGAAAAGTGTGAGCAACAGTCCCCATTTATTCACAGCAGAAGTGATTCATTCTCAAGTTCAATTTCTAGTACTGATTGCATGCTTGCAGTTTCCAAAGAGGTGTCAGGGATATCCAATAAGCATCAAAATGTGAAGGTATTGTCTGGAGAAATCAGAAACGTTTGTCCTGCTTCTCCTGGTAATAAACAATCAAGGATATCTCCTTCAATATCTGGAAAACAATTTGAAAGCCCTGGATCAAATTTGGGAGGGTTGGAGAATGGAAATACTAATGATGGTAATACCAATAATAGTCATCCTGTTCTCAACTCAGGATCGGATGAATTAACCACTTCATCACATGTCAGTAAATTGATTGACAACCTTCACAGTCAATCAATTGAAGTGCAGACTACAGCTGCAGAAGAATTGAGGCTCCTCACAAAGCATAACATGGAAAACCGGGTCATTGTAGGGCAGTGTGGGGCTGCCATGCCTTTACTTTCACTGTTATATTCAGATGTAAAGATAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCACTTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAACCTCTTATCCATGTTCTGAAAACAGGAAATGATGGGGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCTGTTATAGAGAACAATAAGGAAAAAATTGGCCGTTCTGGTGCAGTTAGAGCTTTGGTGGATCTTCTTGCCTCAGGAACACTTAGAGGTAAGAAGGATGCTGCTACTGCTTTATTCAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGGCGGAGCTGTGAAATTTCTGGTTCGGTTAATGGACCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTACAGAGGGCCGATTAGAAATTGCAAGGGAAGGTGGCATCCCATTACTAGTTGAACTTGTTGAATCGGGTTCTCAGAGGGGCAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCCAAGTTTTGTGTTCTGGTTTTGCAAGAAGGAGCTGTACCTCCCTTAGTTGCATTGTCTCAATCTGGTACGCCAAGAGCAAAGGAAAAGGCACAGCAGCTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTATTGGGAAAGGAAAATCATGA 2232 0.4046 MVGVLKRLKPVLDDVMDYKIPLDENLCKECEELDIWINEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVRSLQSPPCASVLANLQELQCLKKEKAMVYIEEALRNQRDNIEPCNEHLKEIIELLKLTSNQELLKESIAVEKERLNAEVNKMKGDLDEINEIVNLVRNLRDYVMKTECPVVKSGVSVPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLTPNYTVKAMIANWREENNIKLSSNSENNNSSRITSPSYCSLPQDFAHACGFGSLPSSNSTSRSSLQTGNAFEKQKGDNSFRLHGECNGFQSGATEKCEQQSPFIHSRSDSFSSSISSTDCMLAVSKEVSGISNKHQNVKVLSGEIRNVCPASPGNKQSRISPSISGKQFESPGSNLGGLENGNTNDGNTNNSHPVLNSGSDELTTSSHVSKLIDNLHSQSIEVQTTAAEELRLLTKHNMENRVIVGQCGAAMPLLSLLYSDVKITQEHAVTALLNLSLNEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSGAVRALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQGGAVKFLVRLMDPADGMVDKAVALLSNLSTITEGRLEIAREGGIPLLVELVESGSQRGKENAASILLQLCLHSSKFCVLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAIGKGKS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00015 743 FunFam RING-type E3 ubiquitin transferase 193 269 - -
Sebi354g00015 743 Coils Coil 144 171 - -
Sebi354g00015 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 580 622 IPR000225 GO:0005515
Sebi354g00015 743 Gene3D - 532 740 IPR011989 -
Sebi354g00015 743 Pfam U-box domain 196 267 IPR003613 GO:0004842|GO:0016567
Sebi354g00015 743 PANTHER U BOX DOMAIN-CONTAINING 6 731 - -
Sebi354g00015 743 FunFam RING-type E3 ubiquitin transferase 441 736 - -
Sebi354g00015 743 SMART arm_5 487 527 IPR000225 GO:0005515
Sebi354g00015 743 SMART arm_5 569 609 IPR000225 GO:0005515
Sebi354g00015 743 SMART arm_5 528 568 IPR000225 GO:0005515
Sebi354g00015 743 SMART arm_5 610 649 IPR000225 GO:0005515
Sebi354g00015 743 SMART arm_5 650 690 IPR000225 GO:0005515
Sebi354g00015 743 SMART Ubox_2 199 262 IPR003613 GO:0004842|GO:0016567
Sebi354g00015 743 CDD RING-Ubox_PUB 197 249 IPR045210 -
Sebi354g00015 743 SUPERFAMILY ARM repeat 452 730 IPR016024 -
Sebi354g00015 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 281 IPR013083 -
Sebi354g00015 743 MobiDBLite consensus disorder prediction 398 452 - -
Sebi354g00015 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Sebi354g00015 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515
Sebi354g00015 743 ProSiteProfiles U-box domain profile. 195 269 IPR003613 GO:0004842|GO:0016567
Sebi354g00015 743 Gene3D - 430 531 IPR011989 -
Sebi354g00015 743 SUPERFAMILY RING/U-box 194 269 - -
Sebi354g00015 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 621 662 IPR000225 GO:0005515
Sebi354g00015 743 MobiDBLite consensus disorder prediction 400 452 - -
Sebi354g00015 743 Pfam Armadillo/beta-catenin-like repeat 572 608 IPR000225 GO:0005515
Sebi354g00015 743 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00015 Sebi-Chr354 284126 287842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00015 13 743 U-box Gene Family AT3G54790 53.949 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00015 - - gmx:100800949 1133.24