Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00013 ATGGCACGTTCGAAGTTCTACAAGAAGCCATCTTTGTTTATGATCGAATATAATCCTGATATGGCTCTCTGTTTTTTACCTGAGATTTTTTCAACGGTCTTTAAAGAAGATGTTCCGAGGAGAGTTGTATTTCGTGATCCTTATCAAAATTTAATTCATCTGGTCGTTCAGAGGGATGGGGATGATCTTCTATTCACTCATGGTTGGACAATGTTGAAAGATATATATGATGATCTTAGTGATGGGGGATGGTTGAAGTTTAACTATGTTGGTGGAAATGAGTTTGACATTAAAGTGATGCACAGGTGGTTAGGTGAAGTAAATTACCCAGTTCCTGGGAAGGAATATAAGCATGAAAGAGAATATCTTCCTGAGGAAGTTATCCCTGGGTACAAGGTACAACATGCAGATGATTTTCACTACGTAGACAAGAAGATGACGGATTACCTTTGTTCCAATCATTTGCTGGTCGATGTTATTGGAGTTGTTACTGGAAAAGGTGAACTTATTGAATATAAGAAACCGGGAAAGACCATCAATTACATTGTGCTTGAGTTGGAAAATGAAGAGCCAGGGGTAAAGTTGCGTTGTACATTGTGGGAGGAGTTCGCTCATTTGTTTTTAAAACGTCTCAAGGAGCAGGCTTCAAGTACAATTGTAGTTGTCCTCCAATTTGCGAAAGTGAAATTCTTCAAAGGATCTGTTGGAGTTTCAAACACTACTTATAACTCCAAGTTATTTGTTAATGAAAAACTTCTTGAAATTGATGATTTCCACCTTAGGTTGACATCATCTGAAAGTCAAATTTCTGTGCAGTGTAGTCAACTACATGATGCAAACAAGGTGTCTGTTGAAGAGGATTTTCTACACAGAGGTGTTTATAAATCAATAGCTGATCTTAAAGAAGTGACTCAAAATGGTGTGTATGTGACGGTTGGAACTGTGAAGGACATAGAATCAGAATATAATTGGTGGTACAGAGCTTGCAAAAAATGTGATAAGGGAATGAAAGTTGATGGATCCATGTTTTACTGCAAAAAATGTGTGTCTCATTGCTCTACATTTATAACCAGGTTTTGTGTCCATCTAAGAGTGGTTGATGAAACAGATTCATCTTCTTTTATCCTATTTGATAATGAAACAACAAATTTTCTTAACATTTCAGCTTCTGAATTGTGTGTTGCATATATTGCTAGGGGAGGTGAAAAAAATCGACGTCCTGAGGAGATGGATGCTTTCCTTGAAAATAAATTTCTATTTAAAGTGCAAGTTAAAATGCAAGACTTCGAATCAATTCTTCCTTCTGTTATAAGCGTTTCTAAACTATGCTTTGATGAAAACATTATTCATGATTTCATTCAGAAACACAGAGTTGATGAGGTTTGTTTCCTCCAAGATCCCTCAGAACTATTGAGCCAATTTACTGAACCCTCTGATTTAGTGAAGGTATTATCATATCCAGTCTTGAGTTCTGTTGGGATTAAAAATGAGAATGCCATCGTTGCTGTAAGCCCTTCTGTTGATGCACCGCTTGCTACTTCTGTGCCAAAGCCATCATTTCTGACTCCATCAAAGGACGACATAAATAGCTGGTGTGCAAAACCAGCAATGGCAATTGGGGATGATGTAGAAATGTCTGCTACTAAGCTGAGGAAAGTCATCAAGGAGGAGAAGGAGTAG 1680 0.375 MARSKFYKKPSLFMIEYNPDMALCFLPEIFSTVFKEDVPRRVVFRDPYQNLIHLVVQRDGDDLLFTHGWTMLKDIYDDLSDGGWLKFNYVGGNEFDIKVMHRWLGEVNYPVPGKEYKHEREYLPEEVIPGYKVQHADDFHYVDKKMTDYLCSNHLLVDVIGVVTGKGELIEYKKPGKTINYIVLELENEEPGVKLRCTLWEEFAHLFLKRLKEQASSTIVVVLQFAKVKFFKGSVGVSNTTYNSKLFVNEKLLEIDDFHLRLTSSESQISVQCSQLHDANKVSVEEDFLHRGVYKSIADLKEVTQNGVYVTVGTVKDIESEYNWWYRACKKCDKGMKVDGSMFYCKKCVSHCSTFITRFCVHLRVVDETDSSSFILFDNETTNFLNISASELCVAYIARGGEKNRRPEEMDAFLENKFLFKVQVKMQDFESILPSVISVSKLCFDENIIHDFIQKHRVDEVCFLQDPSELLSQFTEPSDLVKVLSYPVLSSVGIKNENAIVAVSPSVDAPLATSVPKPSFLTPSKDDINSWCAKPAMAIGDDVEMSATKLRKVIKEEKE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00013 559 Pfam Replication factor-A C terminal domain 311 430 IPR013955 -
Sebi354g00013 559 CDD RPA1_DBD_B_like 158 258 - -
Sebi354g00013 559 PANTHER OS03G0429900 PROTEIN 189 432 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi354g00013 559 SUPERFAMILY Nucleic acid-binding proteins 154 258 IPR012340 -
Sebi354g00013 559 Gene3D - 289 450 IPR012340 -
Sebi354g00013 559 Gene3D - 137 274 IPR012340 -
Sebi354g00013 559 CDD RPA1_DBD_C 297 450 IPR047192 -
Sebi354g00013 559 SUPERFAMILY Nucleic acid-binding proteins 295 432 IPR012340 -
Sebi354g00013 559 Coils Coil 555 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00013 Sebi-Chr354 221923 226811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00013 156 431 Core DNA Replication Machinery Family AT5G08020 23.875 1.98e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00013 - - adu:107490971 288.885