Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi354g00012 | ATGCCGTCGCTACTGTCGCCGGGGAAAATCCACCGGCTGGAGATGGAGAATTTCAAGTCGTACAAGGGTTTCCAAGTTATTGGTCCATTCTACGACTTCACAGCCATCATTGGCCCCAACGGTGCCGGAAAATCGAACCTCATGGACGCTATCAGCTTCGTGCTCGGCGTGAGGACCGGCCAGCTTCGTGGCGCGCAACTCAAGGACCTTATCTACGCCTTCGACGACAGGGAGAAGGAGCAAAAGGGGCGCAGGGCCTCCGTTCGCTTGGTTTACCAGCTCGCCAACAACTCCGAGATCCAATTCACCAGAACCATCACCGCCGCCGGCGCCAGCGAGTACCGCATCGACGGCAACGTTGTCACATGGGACGTCTACAATGCCAGGCTCAAGTCCCTCGGTATTCTTGTTAAGGCTCGCAATTTCTTAGTCTTTCAGGGTGATGTGGAATCCATTGCGTCTAAAAATCCCAAAGAGCTCACTGGCCTTCTTGAGCAGATATCTGGCTCTGACGAGCTTAAGAGGGACTATGAGCAGTTTGAAGAAGAAAAAGGTGCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAGAAAAAGACGGTGGTTATGGAGAGAAAACAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTCCGCCTGCAAGATCAACTGAAACCCCACAAACAGCCTACTCATATGGGCATATCTTCTCCATCTCTATTGGATTCCAAGAGGGAAATATCTTCTCCACAAGCAGTTTGA | 765 | 0.5072 | MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRASVRLVYQLANNSEIQFTRTITAAGASEYRIDGNVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLLEQISGSDELKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKPHKQPTHMGISSPSLLDSKREISSPQAV | 254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi354g00012 | 254 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | 10 | 238 | - | - | |
| Sebi354g00012 | 254 | Pfam | RecF/RecN/SMC N terminal domain | 10 | 137 | IPR003395 | - | |
| Sebi354g00012 | 254 | MobiDBLite | consensus disorder prediction | 231 | 254 | - | - | |
| Sebi354g00012 | 254 | FunFam | Structural maintenance of chromosomes 1A | 9 | 224 | - | - | |
| Sebi354g00012 | 254 | Coils | Coil | 170 | 190 | - | - | |
| Sebi354g00012 | 254 | Coils | Coil | 198 | 225 | - | - | |
| Sebi354g00012 | 254 | CDD | ABC_SMC1_euk | 10 | 157 | IPR028468 | GO:0005524|GO:0007062|GO:0008278|GO:0016887 | |
| Sebi354g00012 | 254 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 226 | IPR027417 | - | |
| Sebi354g00012 | 254 | Gene3D | - | 8 | 242 | IPR027417 | - | |
| Sebi354g00012 | 254 | MobiDBLite | consensus disorder prediction | 201 | 254 | - | - | |
| Sebi354g00012 | 254 | MobiDBLite | consensus disorder prediction | 201 | 227 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi354g00012 | Sebi-Chr354 | 219970 | 221078 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi354g00012 | 6 | 71 | Structural Maintenance of Chromosomes family | AT5G07660 | 39.706 | 5.15e-08 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi354g00012 | K06636 | - | lja:Lj5g3v1073870.1 | 408.297 |