Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00003 ATGGAATTTGATTCTTCTTTCTTCCAATACCAATACCAATACCAAAACCTTAACTCTTCCTTTGCAAATTCCTCTGTTTCTGCAGAGTCTTTCTCTTGGGAGGACTTCTTTTTCTTCAATGAAGACAATACCACCCTTCCTCCCTTTAACTTCACTGATGACCACTCATCACAAATCAAGGAATCATCTTTGGATTCCAACACTTCAGGCTCTCTAGTTAGCACTGAATCACAAGAAGTCTCCTCCAATAATTCAATTCATATCCAAGTCAAAGAAACAGATCATGCATTATCACCACCCAAGGAAGAGGAAAGTAGTAATAACAGAGAGAAGAGGCCTTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCAGAGATAAGGGACTCAACAAGAAATGGGGTTAGAGTGTGGATTGGCACATTTGACACTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTGTCCACAAGAGGTTCCATGGCAGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCACTCAAAGACATGGTCAACAAGCCATGGGAAGATGGTTCCTCTCCTGTGTTAGCACTCAAGAGGAAGCACACAATGAGAAGAAAGTCCAAAACCACTAACAAAAAGACCAAAAGGGACAGCACTAGCAGGGAGATAGAGATGCTTTCTCAAAATGTGCTGGTTTTGGAGGATTTGGGTTCTGAATATCTAGAGCAACTTCTGAGCTTGACTTCTTCTGAATTGCCATTTTAG 765 0.4248 MEFDSSFFQYQYQYQNLNSSFANSSVSAESFSWEDFFFFNEDNTTLPPFNFTDDHSSQIKESSLDSNTSGSLVSTESQEVSSNNSIHIQVKETDHALSPPKEEESSNNREKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMVNKPWEDGSSPVLALKRKHTMRRKSKTTNKKTKRDSTSREIEMLSQNVLVLEDLGSEYLEQLLSLTSSELPF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00003 254 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Sebi354g00003 254 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Sebi354g00003 254 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Sebi354g00003 254 MobiDBLite consensus disorder prediction 49 91 - -
Sebi354g00003 254 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Sebi354g00003 254 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Sebi354g00003 254 MobiDBLite consensus disorder prediction 94 112 - -
Sebi354g00003 254 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Sebi354g00003 254 MobiDBLite consensus disorder prediction 200 221 - -
Sebi354g00003 254 MobiDBLite consensus disorder prediction 49 116 - -
Sebi354g00003 254 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Sebi354g00003 254 PANTHER DNA-BINDING DOMAIN 71 246 IPR044808 GO:0003700|GO:0009873
Sebi354g00003 254 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Sebi354g00003 254 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00003 Sebi-Chr354 84026 84790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00003 106 246 AP2-EREBP Transcription Factor Family AT3G23240 62.676 8.80e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi354g00003 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00003 K14516 - gmx:100784784 279.641