Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi354g00001 ATGTCTAATGACATGACTTTGACTTCCCCTTTCTTTCAAAACCCAGATTGGGAGCCTTCACAAATTTCTTCAGAATCATTTTCAAGCAATGTTGTTGTTCATGATGATTATCTTTCCTTCGATATGGTTGACTTGGACTTCTCCATGGACTCAACAGAAGCAAAGCAATTGGTGAAGAAATCTGAAGCTAAATCATCAGTGCAGATGCAGATGCAGAGTAATGAGAATAATAACAAGAAGGAAAGGTCATCATATATAGGAGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACAAGGAATGGTGCCAGGGTATGGCTTGGAACCTTTGATACTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTTTCCATGAGAGGCCACAACGCTGTTCTCAATTTTCCTGTCAAAATGGTCAAAGAATCTCTGCAACAGATCCAATATGATTGCAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCTTCATCAAAAGCTAAAAAGGGAAAAGGGAAATTACAGGAATCAGAGGCATCAAGTGTGATAGTGCTAGAGGATTTGGGGGTTGAGTATCTTGAGCAACTTCTAACCATATCCGATCAAACTGCAACCACTAGTTCTAGCTACTTCAAGTAA 687 0.4134 MSNDMTLTSPFFQNPDWEPSQISSESFSSNVVVHDDYLSFDMVDLDFSMDSTEAKQLVKKSEAKSSVQMQMQSNENNNKKERSSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDTAEAAALAYDQAAFSMRGHNAVLNFPVKMVKESLQQIQYDCSTNSCSPALALKERHCIQRKLSSSKAKKGKGKLQESEASSVIVLEDLGVEYLEQLLTISDQTATTSSSYFK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi354g00001 228 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Sebi354g00001 228 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Sebi354g00001 228 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Sebi354g00001 228 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Sebi354g00001 228 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Sebi354g00001 228 PANTHER DNA-BINDING DOMAIN 53 217 IPR044808 GO:0003700|GO:0009873
Sebi354g00001 228 MobiDBLite consensus disorder prediction 60 84 - -
Sebi354g00001 228 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Sebi354g00001 228 FunFam Ethylene-responsive transcription factor 2 83 143 - -
Sebi354g00001 228 MobiDBLite consensus disorder prediction 61 81 - -
Sebi354g00001 228 SUPERFAMILY DNA-binding domain 83 144 IPR016177 GO:0003677
Sebi354g00001 228 Pfam AP2 domain 84 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi354g00001 Sebi-Chr354 12838 13524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi354g00001 77 221 AP2-EREBP Transcription Factor Family AT3G23240 53.793 8.77e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi354g00001 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi354g00001 K14516 - gmx:100812017 239.965