Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00087 ATGGCATCTTCATTCTCAATGCAGATGGTGCAAAGTCAGAACCTACTTCCTCGTTTTCATCATGTCCAGGGAAATTTTAGCCAAGATGTATCAAAGGTTCATAGGCCACATGTGGTCTGTAGCAGTACCAAATCAAAGCTTGGTTACAGTAAAACATTGACATCAAGCTCTCATTATGCTGTGAGGTTTTCTGTTACACAACAATCTAAAGCAAAACCAAACACATACAGGAGAATGACATGCACTAATGCTACAGAAAATGTTTTGGAGCTGCAAGCCAAAGTGACACACAAATGTTTCTTTGATATAGAAGTTGGGGGTGAACCTCTTGGCAGGATTGTTTTTGGCCTATTTGGAGAGGTTGTTCCTAAAACAGCTGAGAATTTCCGAGCTTTGTGCACAGGAGAAAAAGGATACGGTTACAAAGGAAGCTACTTCCATCGCATAATCAAAGATTTCATGTGTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGAGGAGTCAGTATCTATGGTTCGTCATTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCAAACACCAATGGTAGTCAATTTTTTATTTGCACTGTAAAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATATTGTGAGGACACTTGAATCACAGGAGACAAGCAAGTTAGATAATAGACCCCGGAAGCCATGCAAAATTGCTAATTCTGGAGAACTGCCTTTAGATGGTTGA 792 0.4116 MASSFSMQMVQSQNLLPRFHHVQGNFSQDVSKVHRPHVVCSSTKSKLGYSKTLTSSSHYAVRFSVTQQSKAKPNTYRRMTCTNATENVLELQAKVTHKCFFDIEVGGEPLGRIVFGLFGEVVPKTAENFRALCTGEKGYGYKGSYFHRIIKDFMCQGGDFTEGNGTGGVSIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDIVRTLESQETSKLDNRPRKPCKIANSGELPLDG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00087 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Sebi353g00087 263 MobiDBLite consensus disorder prediction 239 263 - -
Sebi353g00087 263 CDD cyclophilin_ABH_like 97 257 - -
Sebi353g00087 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 258 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 259 - -
Sebi353g00087 263 FunFam Peptidyl-prolyl cis-trans isomerase 84 263 - -
Sebi353g00087 263 SUPERFAMILY Cyclophilin-like 90 259 IPR029000 -
Sebi353g00087 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Sebi353g00087 263 Gene3D - 87 262 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00087 Sebi-Chr353 1082216 1084669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00087 111 253 U-box Gene Family AT5G67530 45.139 1.70e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00087 K03768 - gmx:100526955 445.277