Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00078 ATGGCTGAGAAGATACTTGACTCCACCCGAGCAGTGACAACCAGAAGCTCCTCCTATCTAACTTCCATGAAAAATGGTCAAATTAATGTGCAAGGAGGTTCATTATCAGGTGTCACACCAAAGACTCACTCGTATTCAATAAACCCTTCCCAAGCAAATTATGAAGATGCCTGCATTGCAAAAAGTGCAAGGTTAAACCCCGGAGGATCAGGACCTCATCATCATTCAGTTATTACAAGGAATAGTTACTTGTGCACATCTTCCACACAGCACTGCCAGTGTTCACCTCCGCTCAAGAAATCAAGAATAATGGATTCAAGCCAAACACCAGCAACAAACTCACTGAATAAACAAGACTTGGGAAAGGTTCATTTCTCCAACACTTTAACACCAAACTGCGTCTCCTTTGTTTCAAGAAGTGAGGAAACACCTCCTGACGAACAGTCTGAAGCTGTTGGTCAATGTGATAACCAAACGTCAAGCTCAGCAGGACTTAAAGCAAAGAGAAAAGTTGATACTAACTATTGTGATGAACAATCTTCTTCCCTATGCTCGCTTGCAGCCTCAAATAACATTGATATTTGTAGCAGCAAACATGACGATAGCGAAAACTCAACATACTTAAGCGATAATGATGAAGAACCAGATGAGAAGCTTGCTCAGGAGAGCACCAGAGTCAAGAGAAGGAGGAATGCAAACAGTCATAGTTTATATGAAAGGAAAAGAAGAGATAAGATCAACAAGAAGATGCGTATGTTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAGGCTTCAATGCTTGATGATGCCATCGAATATCTCAAGACCCTACAGCTTCAGTTACAGATTATGTCAATGGGTGCTGGGCTTTGTATGCCTTTTATGATGTTACCTACTGCCACTCATCCTATGATCACCACACCCCAATTACCTCAGTTAATGGGCTTCAGACCAGGCACAGGCATCTCTTTCAGCCTACCTCAGTTCCCTATTGCACCTTTCACTGACAACAGAGTTAGGATGTTTGGTCTCCCTAACCAGGTGCCATCCATGCCGATTTCTCATGTACCGTTCATTCCTATGGTTGGAAATCCTTCTGCACAACCACTTCTGGCGGAAAACCAAGCTTCTTCCCAGTTAACAACTATAATGTCCTCAGTCCCCAACAACTCATATCTCAATGGAATGGCTCAAACTCAACAAAGCAAGCACTGA 1221 0.4267 MAEKILDSTRAVTTRSSSYLTSMKNGQINVQGGSLSGVTPKTHSYSINPSQANYEDACIAKSARLNPGGSGPHHHSVITRNSYLCTSSTQHCQCSPPLKKSRIMDSSQTPATNSLNKQDLGKVHFSNTLTPNCVSFVSRSEETPPDEQSEAVGQCDNQTSSSAGLKAKRKVDTNYCDEQSSSLCSLAASNNIDICSSKHDDSENSTYLSDNDEEPDEKLAQESTRVKRRRNANSHSLYERKRRDKINKKMRMLKELIPNCNKMDKASMLDDAIEYLKTLQLQLQIMSMGAGLCMPFMMLPTATHPMITTPQLPQLMGFRPGTGISFSLPQFPIAPFTDNRVRMFGLPNQVPSMPISHVPFIPMVGNPSAQPLLAENQASSQLTTIMSSVPNNSYLNGMAQTQQSKH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00078 406 Gene3D - 226 287 IPR036638 GO:0046983
Sebi353g00078 406 SMART finulus 236 285 IPR011598 GO:0046983
Sebi353g00078 406 CDD bHLH_AtPIF_like 230 292 IPR047265 -
Sebi353g00078 406 MobiDBLite consensus disorder prediction 199 242 - -
Sebi353g00078 406 MobiDBLite consensus disorder prediction 137 170 - -
Sebi353g00078 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 290 IPR036638 GO:0046983
Sebi353g00078 406 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Sebi353g00078 406 PANTHER TRANSCRIPTION FACTOR PIF3 31 396 IPR044273 GO:0003700|GO:0006355
Sebi353g00078 406 MobiDBLite consensus disorder prediction 150 167 - -
Sebi353g00078 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00078 Sebi-Chr353 986922 988672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00078 144 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 42.714 9.46e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi353g00078 HLH 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00078 K12126 - gmx:100818543 363.614