Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00057 ATGACAGGAATGTCTTTCCGAGTTCCCACTGTAGATGTTTCAGTGGTTGACCTCACTGTTAGATTGGAGAAGGGAGCAAGTTATGATGAGATTAAAGTTGCTGTCAAGGAGGCAGCTGAGGGAAGTATGAAGGGGGGTCCTTGGTTTACACAGAGGATGATGTTGTGTCTACTTATTTTGCGGGTGACTGCAGGGGAAATTGGAAAGCCAACTACAAGATTAGAGAAAGCTACAGTTCGAAATGGAAAATATAGATGGGAGAATCCGGTATATGAAATGGTCAAGTTTATTCAGGAGCCTAAGACTTGGAAAATCAGTGACAAATATATCATTTTTCAATCTCAACAGGGTTATCAAAAGCTAGCTCCATTGGGAGGTTCCTGTTATAGCAAGTTTGGTGACCCTGCTGGTTGCCCACTCCATTGGTTGTCCATCAGAAAATGTCACCTTACTGTCATTTCTCTGTCAGCAGGGCTTCACACTATTGCAAAGTATGTTCAACAAAGTTGCCCCACTCCATTGGCTTTAGACCGATGCCCCATCAACACCACAGACCCAAAGGATTACGTGGCAGCAGTGGTGAAAACCTCCATGGAAAGCGTTATCAAAGCCTTCAACATGAGCGATAGGCTCACCGTGGAACATGGAGACAACAACCCTGGCATTAAGATGGCACTTGAAGATTGCAAGGACTTATTGCAATCTGCCATTCAGGAACTCCAAGCCTCAGACGGTGAGAAGGAGGTTCAAACCAAGTTACAATCAGGTAGCTTGGACAATGTTGGAAAACTCACTGGCTTGGCACTTGATATTGTGTCTGGTATCACTAAGATCCTTAGTGCTGTTGATTTGAATTTGGCTCTAAAACCCGCTTCTCGTCGTCTTCTTGAGGTCGATCATGAGGGTTACCCAACTTGGTTCTCTGCTTCCGATCGTAAACTCTTGGAGATGATCAGCCAAGGAGTAGGAGGAGCAAATTCAGGCCACAGCACTGGTGGAGGACTTATGCCCAATGCAATTGTCGCTAAGGATGGTAGTGGCCAATTCAAAACTATTTTGGATGCTATTAACTCTTACCCCAAAACCACCAAGGCAGCCACTGTTGCTGATGATTTCATTGCCAAGTCAATTGCATTTGAGAACACTGCTGGTGCTGAAGGCCACCAAGCAGTTGCACTCCGTGTGCAGGGTGATCGCTCTGCATTCTTTGATTGTGCTCTTCGTGGTTACCAAGACACCTTGTATGCTCATGCTCACCGTCAATATTACCGTAACTGTGAGATCTCTGGAACCATTGACTTCATCTTTGGCTACTCCACCACCTTGATCCAGAACTCCAAGATCCTGTTGAGGAAGCCTGGTCCAAACCAACAGAACATTGTGGTGGCTGATGGAACAGATCAGAAGAGCATGCCTACTGGAATTGTCCTTCAGAACTGTGAGATCATGCCATCTCCTGAACTCATGGCTGACAGGTTGACTGTGAAGTCTTACTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCTGTTTTCATTGAAAATGTGATTGGTGATTTGATTCAGCCAGATGGATACATTCCTTGGAATCCAATTGAACCAAACACACAAAATGCTTACTTCGCTGAGTTTGCCAACACGGGACCTGGTGCCAATGCTCAAGCAAGAGCTAAATGGGGAAAAGGTCTCATTAGCAAGGATGAAGCTGCTAGATTCACTGCCGAGCCTTGGCTCCAAGCTAGCACTTGGTTGCCTGCAACTGGCATTCCTTTTGATGCTACCTTCACCAAGGCTTAA 1794 0.4582 MTGMSFRVPTVDVSVVDLTVRLEKGASYDEIKVAVKEAAEGSMKGGPWFTQRMMLCLLILRVTAGEIGKPTTRLEKATVRNGKYRWENPVYEMVKFIQEPKTWKISDKYIIFQSQQGYQKLAPLGGSCYSKFGDPAGCPLHWLSIRKCHLTVISLSAGLHTIAKYVQQSCPTPLALDRCPINTTDPKDYVAAVVKTSMESVIKAFNMSDRLTVEHGDNNPGIKMALEDCKDLLQSAIQELQASDGEKEVQTKLQSGSLDNVGKLTGLALDIVSGITKILSAVDLNLALKPASRRLLEVDHEGYPTWFSASDRKLLEMISQGVGGANSGHSTGGGLMPNAIVAKDGSGQFKTILDAINSYPKTTKAATVADDFIAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCALRGYQDTLYAHAHRQYYRNCEISGTIDFIFGYSTTLIQNSKILLRKPGPNQQNIVVADGTDQKSMPTGIVLQNCEIMPSPELMADRLTVKSYLARPWKAFSRAVFIENVIGDLIQPDGYIPWNPIEPNTQNAYFAEFANTGPGANAQARAKWGKGLISKDEAARFTAEPWLQASTWLPATGIPFDATFTKA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00057 597 SUPERFAMILY Pectin lyase-like 338 592 IPR011050 -
Sebi353g00057 597 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Sebi353g00057 597 Gene3D - 362 594 IPR012334 -
Sebi353g00057 597 PANTHER PECTINESTERASE 167 361 - -
Sebi353g00057 597 Pfam Pectinesterase 362 579 IPR000070 GO:0030599|GO:0042545
Sebi353g00057 597 Gene3D Dihydrodipicolinate Reductase; domain 2 1 55 - -
Sebi353g00057 597 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 1 50 IPR020829 GO:0016620
Sebi353g00057 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 165 274 IPR035513 -
Sebi353g00057 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 165 248 IPR035513 -
Sebi353g00057 597 CDD PMEI-like_3 182 277 - -
Sebi353g00057 597 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00057 Sebi-Chr353 710662 717184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00057 220 594 Carbohydrate Esterase AT5G49180 35.227 1.04e-78 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00057 K01051 - gmx:100808559 611.683