Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00054 ATGAATGGTGTTGGTGTCGCCATAGGCGTTGTTGCTCTTGTCAGCACCAACCAAAACAGTGGCAGTACCGTCGATGAAACGGGCCAAGACAGCAGTGGGACGTTGAGCGCCCACACTAGGGCCGTCCAGGCCGTGTGCCAAGACAGCGATGACGAAAAGTTTTGCGTTGACACTCTCACAAGTGTCAATGCCACAGACCCAAAGGAATACGTTAAAACTGTGGTGAAAAACACCATGGAAGGCGTCATCAAAGCCTTCAACATGAGTGACAAATTCAATTTGCAAGAAATCAAGATCAACACCACTGGTATCAAAATGGCCCTTGATGATTGTAAGGACTTGTTACAATTCGCCATTGAAGAATTACAAGCCTCAAATATTCTAGTTAAGGACAACAACATTCACAGCGTCAGTGATCGTGCCTCAGACCTTAAAAACTGGCTGGGTGCTGTTGTTGCCTACCAACAATCATGCCTTGATGGATTCAACACCGATGCTGAAAAGGAGGTGAAGACACAGTTAAAAACAGATAGTTTGGATTACATGGGGAAGCTTACTGCGTTAGCACTTGATGTTGTGTCTGGGATCTCTAAGATTCTCGATGCCGTTGGCATGAGTTTGAATGTGAAACCTTCCTCTCGTCGCCTTCTTGATGTGGATCAAGATGGATATCCATCTTGGATGTCTGTTGCAGATCGCAGGCTCATGGCTGATATGAAAGAAGGAGGTTCACTCCCACCTAATGCAGTTGTTGCCAAAGATGGCAGCGGCCAATATAAGACTGTTCAGGATGCTATTAACTCATACCCCAAAGGTCACAAAGGCAGATATGTTATCTACATTAAGGCCGGTATCTATCAAGAGTACATTACTGTTGACAAGAAAAAGCCTAATATTTTCATGTATGGTGATGGCCCTGCAAAATCTGTTATCACAGGTAACAGAAATTTCGTGGACGGTTGGAAGACAATGAGATCTGCTACCTTCTCAACCAAGGCTGATGATTTCATTGCCAAGTCAATGGGATTTGAGAACAGTGCTGGAGCACATAAACACCAAGCAGTGGCACTTCATGTGCAAGGTGATCGCTCTGCTTTCTTTGATTGCGCAATAAGTGGTTATCAGGACACGTTGTATGTTCACGCTCACCGTCAATTTTACCGTAACTGTGAAATCTCTGGCACCATAGATTTCATTTTCGGTTACGCAACAACCTTGATCCAGAGCTCGAAGCTAATTGTGAGGAAGCCTGATCCTAATCAGCAAAACATAGTGGTAGCTGATGGGACAGCTGAAAAGAACATGCCAACTGGAGTTGTGATTCAGAATTGTGAGATTGTTCCAGAGGCAACTCTCCAACCAGATAGATTGACGGTGAGGTCGTACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCAATCTTCTTGGAAACTACCATTGGTGATCTCATTCAGCCTGATGGATATCTTCCATGGTCAGGGAATCAGTTCCTTGACACGTGTTATTTTGCTGAGTATGCTAACACTGGAGCTGGTGCTGATGCTCAGAAAAGAGTCAAGTGGGGACGTGGACAGCTTACCAAAGCTGATGCTATGCAATACACTGCTGATCAATGGCTCCAAGCTAACACATGGTTGCCAGCCACTGGCATACCTTTTGATCTTGGCTTCACTAAAGCTTGA 1683 0.4516 MNGVGVAIGVVALVSTNQNSGSTVDETGQDSSGTLSAHTRAVQAVCQDSDDEKFCVDTLTSVNATDPKEYVKTVVKNTMEGVIKAFNMSDKFNLQEIKINTTGIKMALDDCKDLLQFAIEELQASNILVKDNNIHSVSDRASDLKNWLGAVVAYQQSCLDGFNTDAEKEVKTQLKTDSLDYMGKLTALALDVVSGISKILDAVGMSLNVKPSSRRLLDVDQDGYPSWMSVADRRLMADMKEGGSLPPNAVVAKDGSGQYKTVQDAINSYPKGHKGRYVIYIKAGIYQEYITVDKKKPNIFMYGDGPAKSVITGNRNFVDGWKTMRSATFSTKADDFIAKSMGFENSAGAHKHQAVALHVQGDRSAFFDCAISGYQDTLYVHAHRQFYRNCEISGTIDFIFGYATTLIQSSKLIVRKPDPNQQNIVVADGTAEKNMPTGVVIQNCEIVPEATLQPDRLTVRSYLARPWKAYSRAIFLETTIGDLIQPDGYLPWSGNQFLDTCYFAEYANTGAGADAQKRVKWGRGQLTKADAMQYTADQWLQANTWLPATGIPFDLGFTKA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00054 560 Pfam Plant invertase/pectin methylesterase inhibitor 41 190 IPR006501 GO:0004857
Sebi353g00054 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 197 IPR035513 -
Sebi353g00054 560 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Sebi353g00054 560 PANTHER PECTINESTERASE 14 547 - -
Sebi353g00054 560 FunFam Pectinesterase 243 557 - -
Sebi353g00054 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 193 IPR035513 -
Sebi353g00054 560 FunFam Pectinesterase 38 197 - -
Sebi353g00054 560 CDD PMEI-like_3 44 198 - -
Sebi353g00054 560 SMART PMEI_2 37 192 IPR006501 GO:0004857
Sebi353g00054 560 NCBIfam pectinesterase inhibitor domain 32 181 IPR006501 GO:0004857
Sebi353g00054 560 Pfam Pectinesterase 248 542 IPR000070 GO:0030599|GO:0042545
Sebi353g00054 560 SUPERFAMILY Pectin lyase-like 246 555 IPR011050 -
Sebi353g00054 560 Gene3D - 243 557 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00054 Sebi-Chr353 693856 696101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00054 4 557 Carbohydrate Esterase AT2G47030 38.330 1.86e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00054 K01051 - gmx:100820142 858.596