Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00052 ATGAGCTGTTTCAGCTGTTGCGAAGAGGATGAGTTCCACAAGGCTGCTGAAAGTGGAGGGTCATATGTTGTAAAAAATCCAGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAGACCATTAAAGCCCAGCCCATTGAAGTTCCTGATATACCGGCAGATGAACTGAAAGAAGTTACAGATAACTTTGGGCAAGATTCTCTGATTGGAGAGGGATCTTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAGCCTGATGAGGAATTCTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGCTGCTTGGGTATTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCCAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATACACCGGGACATCAAATCAAGCAATGTGCTAATCTTCGATGATGATGTTGCTAAAATTGCAGATTTTGACTTATCAAATCAGGCTCCGGACATGGCTGCTCGTCTTCATTCCACTCGTGTTCTCGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTTTGGAACTTTTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACGCCGAAACTCAGTGAAGATAAAGTCAGGCAGTGTGTGGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTATGGCTGCTGTTGCTGCACTATGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTATTGACTGCACGACCTGGACCTGCTGGTGAAACAGCAAATTGA 1077 0.4355 MSCFSCCEEDEFHKAAESGGSYVVKNPAGNDGNYHASETAKQGAQTIKAQPIEVPDIPADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETAN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00052 358 PIRSF ILK 11 349 - -
Sebi353g00052 358 Pfam Protein tyrosine and serine/threonine kinase 73 342 IPR001245 GO:0004672|GO:0006468
Sebi353g00052 358 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi353g00052 358 SMART serkin_6 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi353g00052 358 Gene3D Transferase(Phosphotransferase) domain 1 144 350 - -
Sebi353g00052 358 FunFam pto-interacting protein 1 145 353 - -
Sebi353g00052 358 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Sebi353g00052 358 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Sebi353g00052 358 CDD STKc_IRAK 75 345 - -
Sebi353g00052 358 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 348 - -
Sebi353g00052 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Sebi353g00052 358 SUPERFAMILY Protein kinase-like (PK-like) 50 342 IPR011009 -
Sebi353g00052 358 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00052 Sebi-Chr353 658949 661646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00052 60 343 Receptor kinase-like Gene Family AT4G02010 51.546 8.10e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi353g00052 PK_Tyr_Ser-Thr 7.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00052 K13436 - gmx:100808383 682.559