Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi353g00048 ATGGAAGCTAGATTTGGTGCAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGTTGTGGGGAAGAGGTCCTCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGGTGAATCCAGTGCCAGCAGATGGTTTGGGAATGGGACAGCAAATTTTCCCACTTGAGCCTGGGATCCCGGCCTCCAACAGCTCTTCTTCCTGCTCTGAGGAAGTAGATCTTCGGAATACCAAGGGGAACAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGATTTGAATGAGGAAGCAGGTACCCTTAGTTTAAAGCTTGGTGGGCATGCTTCTCCAATGGTGGATAGGGAGATTGCGGGCTGGGATGGTATGAACGGTAAAAAAAGCAGAGTAGCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGAGCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAAGCTAGTAGGGCGCTTGTGGGCAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTAGAAGACGCTTGGCAGGCCACAATAAACGAAGAAGGAAAACAAATAACGAAGCTGTTCCTAATGGAAGTTCGCTAAATGATGATCAAACTAGTAGTTATCTGCTGATAAGTTTATTGAAGATACTTTCGAATATGCATTGTGAGTATTTCTGTAAATCATTACCTTTGCAACTAGAGCCTAGAGAAGTTGGTTTCATGTAA 840 0.4476 MEARFGAEAYHFYGVGASSDLRVVGKRSSEWDLNDWRWDGDLFIASRVNPVPADGLGMGQQIFPLEPGIPASNSSSSCSEEVDLRNTKGNKEGEKKRRVIVLEDDDLNEEAGTLSLKLGGHASPMVDREIAGWDGMNGKKSRVAGGTSNRAVCQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGSSLNDDQTSSYLLISLLKILSNMHCEYFCKSLPLQLEPREVGFM 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi353g00048 279 MobiDBLite consensus disorder prediction 218 237 - -
Sebi353g00048 279 Pfam SBP domain 153 226 IPR004333 GO:0003677
Sebi353g00048 279 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Sebi353g00048 279 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Sebi353g00048 279 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Sebi353g00048 279 MobiDBLite consensus disorder prediction 70 90 - -
Sebi353g00048 279 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 88 230 IPR044817 GO:0003677
Sebi353g00048 279 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi353g00048 Sebi-Chr353 607670 608788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi353g00048 1 259 SBP-box Gene Family AT3G60030 50.000 8.70e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi353g00048 SBP 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi353g00048 - - gmx:100814273 461.84