Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi352g00021 ATGGATGAGAAGATAGATGCTGCAGACAAGAAGGTGTTGGTTGATATTGTAAAGTTAGCACAAAAAAGAGGCCTGAAGGGTAAACTGGGAGACTGGAAAGAATTTTTGGACAGTTATGATAAGAAGTTTGGGTCGTGTTTGAGTGATCCGGCAAAGAGGCCCCATGAGACATTGGCTGCATTTCTAAAGACATTTTCAAAGGATGATGATTTGAAGTTTTTTGCGAACATCATGCAACACCATTCAAATCAATACACAGTGGAGCAAATGAAAGATAATTCTCATCATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCGTTATATCCGTTGGATTATTCGTTTTCATCAATTGATGAGGGATGGGTAATTATAAAGCTTAAAAAAAATTCCAAGGTGATGAAATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTACACGAACTTGTAAAACCTGACAAAGCAATTGTAGACTATAGAACAGAGATTACTGGTGTCTCTTCGCAAGATCTAGAGTCAGTGAGTTGCTCATTAGCTGATATACAGAAATCGATGAAGAAGTTGTTAGCAAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGAGTTCTGAAGATAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCACTCCTTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCCATGAAGTTCGGGAAAAGGGTGCTCCACATAACTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAAGATCAAACACGGTGTTGATAGAGAATTTCCATTAACGCTGGTTCAAGAGCCTGTTCCAGAAAGTGAGACTGCAAAGCTGCTTCTTCATGGGATACCAGCCACTGTGAACAGTGAAACACTACATGAAATTGTTCCTGGAGACTTCACAATAAAACCAAAGCCTTCTAGGAAAGGTCCACGAGGAAAATATTCTGCCTTAGCCATCTTTAAGAACCCACAAGAGGCACATGCTGCCTATGAAAATGTCCAAGGCGACCAAACAAAGGATTCGTTTGGACGTCCTCAGAAACTTGTCACATTTCAGCTAAGCACAGGCAGGACTGTCAGTCTGTATGTTCGGAAAATGACAACCGGTGAACCCCATGACCCAAATCCATCTAAGAGAGCTTTACATGTGGATAATGCAGTTGATGTTTCCAAGAAAGCAAAAACGGATCCTGAAATTGAAGAGGCCCCGATAGGCTCTACTAAGGGTGACATTGGCACCCACTTGAATGAGATTGAAGCGTTGAATCAACGATTGAAGCAAAATGATTTGGAGATTGAATCATTGAGGGAACAAGTGAAACAAAAAGATTTTGAAATCGCCATGCTGCATAAAATGGTTATTCTTATAAAGTTATGGCAATGTCTTAACAACCGTTTGGGAGAAACCTAG 1545 0.4078 MDEKIDAADKKVLVDIVKLAQKRGLKGKLGDWKEFLDSYDKKFGSCLSDPAKRPHETLAAFLKTFSKDDDLKFFANIMQHHSNQYTVEQMKDNSHHSPEQRLVQVTLQHPLYPLDYSFSSIDEGWVIIKLKKNSKVMKSTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHELVKPDKAIVDYRTEITGVSSQDLESVSCSLADIQKSMKKLLANGTILVGHSLHNDLRVLKIDHVRVVDTAYIFHSLDGSIHRRPSLNSLCQAVLGHEVREKGAPHNCLDDACAAMKLVLAKIKHGVDREFPLTLVQEPVPESETAKLLLHGIPATVNSETLHEIVPGDFTIKPKPSRKGPRGKYSALAIFKNPQEAHAAYENVQGDQTKDSFGRPQKLVTFQLSTGRTVSLYVRKMTTGEPHDPNPSKRALHVDNAVDVSKKAKTDPEIEEAPIGSTKGDIGTHLNEIEALNQRLKQNDLEIESLREQVKQKDFEIAMLHKMVILIKLWQCLNNRLGET 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi352g00021 514 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Sebi352g00021 514 Coils Coil 463 483 - -
Sebi352g00021 514 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 311 IPR047021 GO:0004527
Sebi352g00021 514 MobiDBLite consensus disorder prediction 435 455 - -
Sebi352g00021 514 CDD REX1_like 143 294 IPR034922 -
Sebi352g00021 514 SMART exoiiiendus 141 302 IPR013520 -
Sebi352g00021 514 FunFam Small RNA degrading nuclease 3 137 311 - -
Sebi352g00021 514 Gene3D - 137 306 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi352g00021 Sebi-Chr352 629002 634843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi352g00021 118 307 C2H2 Transcription Factor Family AT3G27970 29.493 7.05e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi352g00021 K14570 - gmx:100785565 763.066