Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi352g00019 ATGCAACGAAACAATTATGCATTTCCCAGACCCCCAAATCGATTGAATGCTATGCCTATCAATCAAATGGGTGCTACTGAGAATCATAAACCCTCTGGTATACCACCCTCTCACCCTAATACCAATACCTCACCTTCATCTCCTTATCCCCAATTTATGGCCTCTCAATCCCATTCTGGTTCCCAAAGATTGCGTTCTCCCAATTTGAGTCCAGGCTCATCCTCATCCCATTCAAGGTCTTTGTCTCAACCCCCTTTTTTCTCTCTGGATCCCTTGCCTCCATTGAGCCCTTCCCCTTATCGAGAACCCTTGGCTGCTACCTCCTTTTCTGACTCAATTTCAACAAATGTGCCTATGGAGGAAACCTTGGCTACCTCTCATGCCCCTTCCCCTAACCGTGGTCATGCTCTTCAGCTTGGTCATTGTCTTCCCCCTCGTAAAGGACACAGGCGTTCTAGCAGTGATTCCCCTTTAGGAATCTCGGATTTCATTCAGTCTGTCCCTCAGTTGGTTCCCCCTGCGGTGTGGAGTGATCGCCCCAATTCAGCTTCTAGGGGAGAAAACTCTGGTTTTGAGAAGCCAATTCAGTTGGTGTTGAAGGCGCCGTATAAGGATACGAATCGTGTTGATGGCTTTAGTGGAGAACCTATGGATCAGAAGAAAGAGGATGATTCCCTGGATGATTTATTTAGTGCATACATGAATTTGGACAACATTCATAGTATGAATTTTTCTGGAATGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCCAAGACAGTTGAAAGCAGTGACAATGAAGTTGACAGTCATGCGAATGGAAAAGCTGCAGCCGGTGCTCAGGGGGCAAGTTCAAGCTGTTCGGATGAGAGGAGGGAAGGGGTTAAGAGGAGTTCTAATGGAGATATTGTGCCGGGCACCCGGCACCGGAGAAGTTTCTCATTGGACAGTTCTATAGAAAATTTTCGTATTGAAGATGGATCACCTAAGCTTCCTCCTTTACAAAATCGAGTTGGTCAACACTCGCCTAGCAATTCAATAGATGGTAAAACATCTGGAATCAGCATGGAGTTTGGAAATGGTGAATTCAACTCAGAGGAGATAAAGAAAATAATGGAAAATGATAAACTTGCAGAAATTGCCATGTCTGATCCCAAGCGTGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTCAAGGTCCAAACTCTTCAGACAGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGGATAATACAGAGCTTAAAAATGAGAATAACGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGCTCTGAATGAGACTCTGGATGCTGAAGTACGGCGTTTAAGACGCACTGTGGCAGACCTTGGTGGAGAGTCTCTCCTCTCAAGTCTCATGGCTCAACAACTTGCTATTAGCAATCAAATGTTTCAGTCACAGCACCAGCAGCCCAACCAGGTTAGACATTTTCAACAGCAAAACAACCATTCTCAGGAAGAGACACAGACTCAATCACAGCAGATTCAGCGCAACAATGAATTCCAGTCCCAGCGGCAGAATGGCAAAGCTACTGCCTACTGA 1662 0.4513 MQRNNYAFPRPPNRLNAMPINQMGATENHKPSGIPPSHPNTNTSPSSPYPQFMASQSHSGSQRLRSPNLSPGSSSSHSRSLSQPPFFSLDPLPPLSPSPYREPLAATSFSDSISTNVPMEETLATSHAPSPNRGHALQLGHCLPPRKGHRRSSSDSPLGISDFIQSVPQLVPPAVWSDRPNSASRGENSGFEKPIQLVLKAPYKDTNRVDGFSGEPMDQKKEDDSLDDLFSAYMNLDNIHSMNFSGMEDKDLDSRTSGSKTVESSDNEVDSHANGKAAAGAQGASSSCSDERREGVKRSSNGDIVPGTRHRRSFSLDSSIENFRIEDGSPKLPPLQNRVGQHSPSNSIDGKTSGISMEFGNGEFNSEEIKKIMENDKLAEIAMSDPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNTELKNENNEYKLRLQSLEQQSQLKDALNETLDAEVRRLRRTVADLGGESLLSSLMAQQLAISNQMFQSQHQQPNQVRHFQQQNNHSQEETQTQSQQIQRNNEFQSQRQNGKATAY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi352g00019 553 SMART brlzneu 383 447 IPR004827 GO:0003700|GO:0006355
Sebi352g00019 553 MobiDBLite consensus disorder prediction 122 158 - -
Sebi352g00019 553 CDD bZIP_plant_RF2 388 460 IPR044759 GO:0003700|GO:0006355
Sebi352g00019 553 MobiDBLite consensus disorder prediction 503 553 - -
Sebi352g00019 553 Coils Coil 403 423 - -
Sebi352g00019 553 MobiDBLite consensus disorder prediction 336 360 - -
Sebi352g00019 553 MobiDBLite consensus disorder prediction 247 360 - -
Sebi352g00019 553 Coils Coil 431 486 - -
Sebi352g00019 553 Gene3D - 384 447 - -
Sebi352g00019 553 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 385 448 IPR004827 GO:0003700|GO:0006355
Sebi352g00019 553 FunFam Transcription factor VIP1 isoform A 385 447 - -
Sebi352g00019 553 MobiDBLite consensus disorder prediction 1 103 - -
Sebi352g00019 553 MobiDBLite consensus disorder prediction 19 85 - -
Sebi352g00019 553 Pfam bZIP transcription factor 387 445 IPR004827 GO:0003700|GO:0006355
Sebi352g00019 553 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 61 544 - -
Sebi352g00019 553 SUPERFAMILY Leucine zipper domain 387 443 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi352g00019 Sebi-Chr352 585478 588414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi352g00019 33 500 bZIP Transcription Factor Family AT4G38900 45.562 1.74e-101 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi352g00019 bZIP_1 5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi352g00019 - - gmx:100810841 729.939