Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi352g00018 ATGCAACATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCAATCCTGCAGCGAGATACTGCAATTGCTGAACGAAACAGTGCATTAATGGAACGAGATAATGCAATTGCAACCTTTCAGTTTAGAGAAAAATCCTTGACCAAAGGCAGTATGTCACCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCATATACATCATTTGCAACAACAGGTAAACCATATACCTAATATGGTTGATGCTTCTTACAGCACACGGGAAATGCACACAAGTGATGCTCTCCCAGCTGCACCCATTCCTTCAGAGGCTGGGAAGTCTCGGCAGGCCAAGCGACCAAGGGAAGGTAAGTCAGTTTCACCTAAAAAGAAGACTCCAAAAACTACTAGAAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGGTGATGTCTGCCAATAGCAAGGCACATGAATGGAATAGTAGTCAGGAGATTATAAATGGAGGAGATGATCTTAACAAGCAGTTAACGGTGTCAAAGGCTGATTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGCATATGATGAGTCAACCATGCCAGCGCCAGTGTGTTCATGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCCTGTTGCACAACCACCTTATCAGTATATCCACTTCCAGCTGTACCCAACAAGAGGCATGCTCGGATAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAGTAAACTGCTTAGCCGGCTTGCAGCAGAAGGGCATGATCTGTCAAACCCAGTTGACCTTAAAGACAATTGGGCCAAACATGGGACAAATCGATATATCACGATAAAGTAG 945 0.4497 MQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAERNSALMERDNAIATFQFREKSLTKGSMSPCPPGCQISRGVKHIHHLQQQVNHIPNMVDASYSTREMHTSDALPAAPIPSEAGKSRQAKRPREGKSVSPKKKTPKTTRKVKKESEDLNKVMSANSKAHEWNSSQEIINGGDDLNKQLTVSKADWKAQDLALNQVAYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi352g00018 314 MobiDBLite consensus disorder prediction 135 150 - -
Sebi352g00018 314 MobiDBLite consensus disorder prediction 115 178 - -
Sebi352g00018 314 PANTHER - 6 314 IPR010409 -
Sebi352g00018 314 Coils Coil 26 46 - -
Sebi352g00018 314 Pfam GAGA binding protein-like family 2 314 IPR010409 -
Sebi352g00018 314 SMART GAGA_bind_2 1 314 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi352g00018 Sebi-Chr352 549801 550745 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi352g00018 40 314 BBR or BPC Transcription factor family AT5G42520 61.149 1.02e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Sebi352g00018 GAGA_bind 2.8e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi352g00018 - - gmx:100783502 534.258