Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi352g00001 ATGAAGATCCAGTGCGACGTGTGCACCAAAAACGAGGCTTCGGTATTCTGCACCGCCGACGAAGCCGCACTCTGTGACGGCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCGGCAAAACAATACCCTCTCTGCGATATTTGCAAGGAGAGAAGAGCTTTCCTGTTCTGTCAGCAAGACAGAGCGATTCTTTGCAAAGAGTGTGACTTCCCCATTCATTCTGCCAACGAGCACACCCAGAAGCATGATAGGTTCCTTCTCACTGGTGTTAAGCTCTCTTCTTCTGCTAACCTTTATTCAACAACAACACCTTCCAATTCCGTTTTGACCACTGCTTCTGATTCTAAGTCAAAGCCCCCTTCTGTTCACTCTTCTTCTAACCTTTCACATCAACCTTTCATCGCCAAAACCACTCCTTCCACAACCCTCGACAAGATTGGGGTAACTATGGAAGGAACCGGTTCCACAACTACTAGTAGCATATCCGAGTATTTGATAGAGACTCTCCCTGGCTGGCAGGTTGAAGACCTTCTTGATTCCTATTCTGTTCCCTTTGGTTTCTCTAAGAGTGATGATATGTTGCCACTGTTTGATGCTGGTATTGAGGGGAATCTTGGTTCCTTCTCGCCAGAGGGTATGGGGATCTGGGTTCCTCAAGCACCACCTCCTCTGTATTCTTCACAAATGGATCGGGTGATTGGGCACAGTGAGACAAAGGAAGCCAACAACATGAAAGGCAACAGCAGATCAAGGTTGAGGGATGACAATTTCACTGTTCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAACCAGATATCTATGGTAG 867 0.4787 MKIQCDVCTKNEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSAKQYPLCDICKERRAFLFCQQDRAILCKECDFPIHSANEHTQKHDRFLLTGVKLSSSANLYSTTTPSNSVLTTASDSKSKPPSVHSSSNLSHQPFIAKTTPSTTLDKIGVTMEGTGSTTTSSISEYLIETLPGWQVEDLLDSYSVPFGFSKSDDMLPLFDAGIEGNLGSFSPEGMGIWVPQAPPPLYSSQMDRVIGHSETKEANNMKGNSRSRLRDDNFTVPQISPQSNSKRTRYLW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi352g00001 288 MobiDBLite consensus disorder prediction 116 146 - -
Sebi352g00001 288 CDD Bbox1_BBX-like 5 47 - -
Sebi352g00001 288 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 281 - -
Sebi352g00001 288 Gene3D Classic Zinc Finger 1 99 - -
Sebi352g00001 288 SMART bboxneu5 4 47 IPR000315 GO:0008270
Sebi352g00001 288 SMART bboxneu5 53 100 IPR000315 GO:0008270
Sebi352g00001 288 MobiDBLite consensus disorder prediction 266 288 - -
Sebi352g00001 288 MobiDBLite consensus disorder prediction 250 265 - -
Sebi352g00001 288 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Sebi352g00001 288 FunFam B-box zinc finger protein 21 1 98 - -
Sebi352g00001 288 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Sebi352g00001 288 CDD Bbox1_BBX-like 57 100 - -
Sebi352g00001 288 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi352g00001 288 MobiDBLite consensus disorder prediction 250 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi352g00001 Sebi-Chr352 7029 8210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi352g00001 1 288 C2C2-CO-like Transcription Factor Family AT1G75540 47.164 5.02e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi352g00001 zf-B_box 9.3e-07 No_clan