Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi351g00045 ATGGGTTACCTGCAGATTCATCCAATTTTGTCAGTTCAGATCGATCTTGACAGCAGGATGGTGAGGGGAAAAACTCAGATGAAGCGCATAGAAAATGAGACAAGCAGGCAAGTAACTTTCTCCAAGAGAAGGAATGGACTTCTTAAGAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGGAAGCTCTATGAGTTCTCCAGTTCCAG 239 0.4435 MGYLQIHPILSVQIDLDSRMVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSS 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi351g00045 79 ProSiteProfiles MADS-box domain profile. 20 79 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 FunFam Agamous-like MADS-box protein AGL13 32 79 - -
Sebi351g00045 79 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 78 - -
Sebi351g00045 79 Gene3D - 32 79 IPR036879 GO:0003677|GO:0046983
Sebi351g00045 79 CDD MADS_MEF2_like 22 79 IPR033896 GO:0000977|GO:0045944
Sebi351g00045 79 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Sebi351g00045 79 SUPERFAMILY SRF-like 22 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi351g00045 Sebi-Chr351 1036612 1041539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi351g00045 20 79 MADS-box Gene Family AT4G11880 95.000 2.84e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi351g00045 SRF-TF 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi351g00045 - - pop:18094432 116.316